Wall clock time and date at job start Sun Mar 29 2020 22:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99594 * 2 1 4 4 C 1.50702 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.32989 * 120.00346 * 134.99794 * 4 3 2 6 6 C 1.47105 * 120.00319 * 180.02562 * 5 4 3 7 7 O 1.21614 * 119.99376 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00173 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99866 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46881 * 178.27895 * 9 8 6 11 11 C 1.50699 * 115.55137 * 65.14058 * 10 9 8 12 12 H 1.07997 * 120.00271 * 265.40275 * 11 10 9 13 13 C 1.37883 * 119.99835 * 85.40105 * 11 10 9 14 14 N 1.31518 * 120.00008 * 353.56342 * 13 11 10 15 15 Si 1.86799 * 119.99978 * 173.55285 * 13 11 10 16 16 H 1.48503 * 109.46660 * 60.00348 * 15 13 11 17 17 H 1.48492 * 109.47240 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47494 * 300.00684 * 15 13 11 19 19 C 1.52994 * 117.49886 * 279.46696 * 10 9 8 20 20 C 1.53008 * 117.49705 * 210.80902 * 10 9 8 21 21 H 1.08999 * 109.47085 * 300.00213 * 1 2 3 22 22 H 1.09005 * 109.46928 * 60.00568 * 1 2 3 23 23 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47596 * 59.99632 * 3 2 1 25 25 H 1.09006 * 109.47296 * 299.99692 * 3 2 1 26 26 H 1.08009 * 119.99660 * 314.99776 * 4 3 2 27 27 H 1.08002 * 119.99951 * 0.27214 * 5 4 3 28 28 H 0.96999 * 119.99663 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47065 * 298.27593 * 9 8 6 30 30 H 1.08998 * 109.47372 * 58.27803 * 9 8 6 31 31 H 0.96997 * 119.99595 * 185.06293 * 14 13 11 32 32 H 1.09003 * 117.49802 * 0.02562 * 19 10 9 33 33 H 1.09005 * 117.49704 * 145.02071 * 19 10 9 34 34 H 1.08994 * 117.49905 * 214.98386 * 20 10 9 35 35 H 1.09004 * 117.49490 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2400 1.9458 -0.8136 6 6 5.7064 1.8294 -0.8134 7 8 6.2535 1.0391 -0.0682 8 7 6.4437 2.5984 -1.6389 9 6 7.9041 2.4828 -1.6382 10 6 8.4909 3.4277 -2.6888 11 6 8.2839 4.8976 -2.4290 12 1 7.4444 5.4116 -2.8734 13 6 9.1663 5.5863 -1.6239 14 7 10.1135 4.9384 -0.9816 15 14 9.0165 7.4398 -1.4458 16 1 7.6827 7.7771 -0.8868 17 1 10.0766 7.9365 -0.5322 18 1 9.1714 8.0793 -2.7771 19 6 8.4796 2.9593 -4.1452 20 6 9.7966 3.0071 -3.3666 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6885 1.8465 0.8899 25 1 1.6886 1.8464 -0.8901 26 1 3.9984 0.4848 0.6624 27 1 3.7544 2.6507 -1.4722 28 1 6.0073 3.2289 -2.2329 29 1 8.2892 2.7496 -0.6541 30 1 8.1875 1.4569 -1.8735 31 1 10.6877 5.4109 -0.3587 32 1 8.0537 1.9781 -4.3550 33 1 8.3227 3.7144 -4.9156 34 1 10.5056 3.7936 -3.6249 35 1 10.2377 2.0574 -3.0637 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867979643.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:53 Heat of formation + Delta-G solvation = -47.550101 kcal Electronic energy + Delta-G solvation = -16428.691467 eV Core-core repulsion = 13621.001099 eV Total energy + Delta-G solvation = -2807.690369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.10275 -38.09441 -36.69881 -33.58390 -33.24389 -31.97838 -28.24104 -26.57207 -25.61380 -24.82306 -21.38943 -20.94596 -19.57333 -18.96567 -17.29102 -16.39697 -16.16718 -15.89851 -15.15224 -14.82033 -14.73669 -14.35797 -13.82237 -13.22059 -12.97055 -12.67401 -12.47690 -11.91099 -11.78526 -11.59464 -11.33779 -11.00715 -10.93430 -10.55763 -10.27517 -10.10877 -9.68607 -9.40149 -9.29504 -8.98035 -8.50695 -8.27635 -8.06364 -6.08606 -4.17677 1.51124 3.26047 3.32404 3.33319 3.50459 3.80597 4.08781 4.34587 4.84606 4.94304 5.06827 5.10515 5.18235 5.19623 5.31779 5.35902 5.39960 5.61852 6.02572 6.33017 6.37379 6.43679 6.51145 6.57189 6.69295 6.88225 6.91609 7.09153 7.29222 7.42917 7.48443 7.80236 8.31746 8.33190 8.82617 8.89811 9.49182 10.99229 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.004725 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.519983 B = 5924.218464 C = 6390.219015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.087 3.913 4 C -0.084 4.084 5 C -0.185 4.185 6 C 0.532 3.468 7 O -0.560 6.560 8 N -0.695 5.695 9 C 0.162 3.838 10 C 0.027 3.973 11 C -0.503 4.503 12 H 0.060 0.940 13 C 0.074 3.926 14 N -0.874 5.874 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.211 4.211 20 C -0.148 4.148 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.401 0.599 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.263 0.737 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.904 -4.366 -0.506 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.011 3.989 4 C -0.104 4.104 5 C -0.206 4.206 6 C 0.319 3.681 7 O -0.441 6.441 8 N -0.343 5.343 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.540 4.540 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.248 4.248 20 C -0.186 4.186 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.235 0.765 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.146 -5.032 0.086 15.015 hybrid contribution -0.377 1.666 -0.125 1.713 sum -14.524 -3.366 -0.039 14.909 Atomic orbital electron populations 1.22764 0.80852 1.02898 1.00048 1.87941 1.19766 1.27414 1.95453 1.21573 0.91101 0.85168 1.01071 1.23301 0.93458 0.97136 0.96479 1.22738 0.94122 1.02478 1.01280 1.18448 0.87271 0.81400 0.80952 1.90749 1.73657 1.38388 1.41305 1.45896 1.08655 1.39731 1.39993 1.21018 0.77175 0.96545 1.01366 1.19028 0.96885 0.94310 0.87114 1.20308 1.11047 0.91139 1.31520 0.92218 1.24994 0.94602 0.98108 0.95327 1.69967 1.19192 1.36101 1.25732 0.86681 0.77763 0.85663 0.78002 1.20250 1.21263 1.20188 1.23027 1.04005 1.00116 0.97651 1.22493 0.91105 1.00402 1.04599 0.93970 0.93946 0.89506 0.91547 0.92162 0.84898 0.85695 0.76483 0.90867 0.94371 0.92749 0.91613 0.90344 0.89812 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.50 10.69 -35.23 -0.38 -4.88 16 3 C 0.09 0.91 6.36 36.01 0.23 1.14 16 4 C -0.08 -1.13 9.47 -36.13 -0.34 -1.48 16 5 C -0.19 -2.69 9.63 -37.81 -0.36 -3.05 16 6 C 0.53 10.32 7.76 -12.66 -0.10 10.22 16 7 O -0.56 -12.94 16.22 5.27 0.09 -12.85 16 8 N -0.70 -13.76 5.47 -61.49 -0.34 -14.09 16 9 C 0.16 3.73 5.50 -4.04 -0.02 3.71 16 10 C 0.03 0.64 1.38 -155.66 -0.21 0.43 16 11 C -0.50 -12.89 8.63 -34.44 -0.30 -13.19 16 12 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 13 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 14 N -0.87 -24.30 12.91 55.43 0.72 -23.58 16 15 Si 0.89 20.48 29.55 -169.99 -5.02 15.45 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.21 -4.38 9.96 -26.70 -0.27 -4.65 16 20 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16 21 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 26 H 0.13 2.02 7.49 -52.48 -0.39 1.63 16 27 H 0.13 1.42 7.93 -52.49 -0.42 1.01 16 28 H 0.40 7.13 8.35 -40.82 -0.34 6.79 16 29 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 30 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -30.47 309.82 -6.21 -36.68 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.33 Total: 5.90 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.61 Total: -7.30 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.38 Total: -37.68 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.29 Total: -17.73 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.47 -6.21 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867979643.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.870 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds