Wall clock time and date at job start Sun Mar 29 2020 22:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99594 * 2 1 4 4 C 1.50702 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.32989 * 120.00346 * 134.99794 * 4 3 2 6 6 C 1.47105 * 120.00319 * 180.02562 * 5 4 3 7 7 O 1.21614 * 119.99376 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00173 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99866 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46881 * 178.27895 * 9 8 6 11 11 C 1.50699 * 115.55137 * 65.14058 * 10 9 8 12 12 H 1.07997 * 120.00271 * 265.40275 * 11 10 9 13 13 C 1.37883 * 119.99835 * 85.40105 * 11 10 9 14 14 N 1.31518 * 120.00008 * 353.56342 * 13 11 10 15 15 Si 1.86799 * 119.99978 * 173.55285 * 13 11 10 16 16 H 1.48503 * 109.46660 * 60.00348 * 15 13 11 17 17 H 1.48492 * 109.47240 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47494 * 300.00684 * 15 13 11 19 19 C 1.52994 * 117.49886 * 279.46696 * 10 9 8 20 20 C 1.53008 * 117.49705 * 210.80902 * 10 9 8 21 21 H 1.08999 * 109.47085 * 300.00213 * 1 2 3 22 22 H 1.09005 * 109.46928 * 60.00568 * 1 2 3 23 23 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47596 * 59.99632 * 3 2 1 25 25 H 1.09006 * 109.47296 * 299.99692 * 3 2 1 26 26 H 1.08009 * 119.99660 * 314.99776 * 4 3 2 27 27 H 1.08002 * 119.99951 * 0.27214 * 5 4 3 28 28 H 0.96999 * 119.99663 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47065 * 298.27593 * 9 8 6 30 30 H 1.08998 * 109.47372 * 58.27803 * 9 8 6 31 31 H 0.96997 * 119.99595 * 185.06293 * 14 13 11 32 32 H 1.09003 * 117.49802 * 0.02562 * 19 10 9 33 33 H 1.09005 * 117.49704 * 145.02071 * 19 10 9 34 34 H 1.08994 * 117.49905 * 214.98386 * 20 10 9 35 35 H 1.09004 * 117.49490 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2400 1.9458 -0.8136 6 6 5.7064 1.8294 -0.8134 7 8 6.2535 1.0391 -0.0682 8 7 6.4437 2.5984 -1.6389 9 6 7.9041 2.4828 -1.6382 10 6 8.4909 3.4277 -2.6888 11 6 8.2839 4.8976 -2.4290 12 1 7.4444 5.4116 -2.8734 13 6 9.1663 5.5863 -1.6239 14 7 10.1135 4.9384 -0.9816 15 14 9.0165 7.4398 -1.4458 16 1 7.6827 7.7771 -0.8868 17 1 10.0766 7.9365 -0.5322 18 1 9.1714 8.0793 -2.7771 19 6 8.4796 2.9593 -4.1452 20 6 9.7966 3.0071 -3.3666 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6885 1.8465 0.8899 25 1 1.6886 1.8464 -0.8901 26 1 3.9984 0.4848 0.6624 27 1 3.7544 2.6507 -1.4722 28 1 6.0073 3.2289 -2.2329 29 1 8.2892 2.7496 -0.6541 30 1 8.1875 1.4569 -1.8735 31 1 10.6877 5.4109 -0.3587 32 1 8.0537 1.9781 -4.3550 33 1 8.3227 3.7144 -4.9156 34 1 10.5056 3.7936 -3.6249 35 1 10.2377 2.0574 -3.0637 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867979643.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:53 Heat of formation + Delta-G solvation = -68.261218 kcal Electronic energy + Delta-G solvation = -16429.589569 eV Core-core repulsion = 13621.001099 eV Total energy + Delta-G solvation = -2808.588470 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67003 -38.93476 -38.46001 -34.95636 -34.68523 -33.96239 -29.33596 -27.96195 -27.21546 -26.06046 -23.03623 -22.38421 -21.33902 -20.39086 -18.67649 -17.93831 -17.22284 -16.89554 -16.68312 -16.32162 -16.07349 -15.98283 -15.45463 -14.82923 -14.39463 -13.85325 -13.69096 -13.45746 -13.30774 -12.93394 -12.78067 -12.72846 -12.38146 -12.17829 -12.04585 -11.50376 -11.04170 -10.91692 -10.86067 -10.45619 -10.37815 -10.05000 -9.80479 -8.09245 -6.23081 0.32349 1.44634 1.46193 1.52807 2.31026 2.34744 2.44203 3.02786 3.18848 3.50513 3.86754 4.05691 4.22579 4.30637 4.42027 4.46491 4.54853 4.60109 4.62794 4.65045 4.72289 4.90377 4.98773 5.01685 5.26318 5.29476 5.39361 5.56898 5.60438 5.68549 5.78139 6.20876 6.36562 6.77256 6.85153 7.36684 7.46828 8.98232 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.004725 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.519983 B = 5924.218464 C = 6390.219015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.089 3.911 4 C -0.068 4.068 5 C -0.194 4.194 6 C 0.526 3.474 7 O -0.607 6.607 8 N -0.691 5.691 9 C 0.177 3.823 10 C 0.005 3.995 11 C -0.507 4.507 12 H 0.067 0.933 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 0.952 3.048 16 H -0.269 1.269 17 H -0.293 1.293 18 H -0.269 1.269 19 C -0.175 4.175 20 C -0.161 4.161 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.165 0.835 28 H 0.413 0.587 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.259 0.741 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 -3.584 -1.598 17.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C 0.014 3.986 4 C -0.088 4.088 5 C -0.214 4.214 6 C 0.316 3.684 7 O -0.491 6.491 8 N -0.339 5.339 9 C 0.053 3.947 10 C 0.005 3.995 11 C -0.544 4.544 12 H 0.085 0.915 13 C -0.177 4.177 14 N -0.547 5.547 15 Si 0.778 3.222 16 H -0.194 1.194 17 H -0.219 1.219 18 H -0.194 1.194 19 C -0.212 4.212 20 C -0.199 4.199 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.183 0.817 28 H 0.249 0.751 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.827 -4.232 -1.037 17.382 hybrid contribution 0.391 1.335 0.249 1.413 sum -16.436 -2.897 -0.788 16.708 Atomic orbital electron populations 1.22977 0.78766 1.03987 1.01376 1.87891 1.22068 1.28068 1.95761 1.21630 0.88413 0.85327 1.03252 1.23486 0.95705 0.95133 0.94488 1.22635 0.90727 1.04679 1.03374 1.19281 0.89388 0.80108 0.79601 1.90723 1.75062 1.40299 1.43062 1.45765 1.07290 1.40255 1.40549 1.20583 0.79203 0.96041 0.98895 1.19050 0.97765 0.93718 0.88992 1.20657 1.10797 0.92244 1.30746 0.91536 1.25744 0.94541 1.02101 0.95343 1.70108 1.20300 1.37542 1.26721 0.85708 0.77666 0.80844 0.77967 1.19438 1.21877 1.19439 1.23015 1.01210 1.01251 0.95766 1.22438 0.91425 1.00022 1.06007 0.92656 0.92536 0.88704 0.89497 0.89591 0.87452 0.81735 0.75071 0.95271 0.94749 0.93226 0.89356 0.89340 0.91738 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.74 10.69 -148.98 -1.59 -10.34 16 3 C 0.09 1.59 6.36 71.24 0.45 2.04 16 4 C -0.07 -1.73 9.47 24.52 0.23 -1.50 16 5 C -0.19 -5.24 9.63 23.43 0.23 -5.02 16 6 C 0.53 20.33 7.76 86.57 0.67 21.01 16 7 O -0.61 -28.89 16.22 -4.08 -0.07 -28.96 16 8 N -0.69 -27.01 5.47 -466.71 -2.55 -29.57 16 9 C 0.18 8.31 5.50 86.38 0.48 8.79 16 10 C 0.01 0.26 1.38 -52.93 -0.07 0.18 16 11 C -0.51 -25.72 8.63 25.60 0.22 -25.50 16 12 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 13 C 0.02 1.24 5.39 84.66 0.46 1.69 16 14 N -0.91 -51.73 12.91 21.45 0.28 -51.45 16 15 Si 0.95 41.89 29.55 68.60 2.03 43.91 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 C -0.18 -6.95 9.96 30.62 0.30 -6.65 16 20 C -0.16 -7.37 9.42 30.62 0.29 -7.09 16 21 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 22 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 23 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.13 7.89 -2.38 -0.02 1.11 16 26 H 0.11 3.30 7.49 -2.91 -0.02 3.28 16 27 H 0.17 3.10 7.93 -2.91 -0.02 3.08 16 28 H 0.41 13.99 8.35 -92.71 -0.77 13.22 16 29 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.03 1.61 8.09 -2.39 -0.02 1.59 16 31 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 32 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 34 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -67.18 309.82 2.89 -64.29 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.30 Total: 22.59 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 4.50 Total: -10.48 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.28 Total: -81.02 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.66 Total: -39.29 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -67.18 2.89 -64.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867979643.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.968 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds