Wall clock time and date at job start Sun Mar 29 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00179 * 2 1 4 4 O 1.20825 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.53002 * 119.29820 * 250.95113 * 5 3 2 7 7 C 1.53874 * 121.33346 * 179.11814 * 5 3 2 8 8 H 1.09003 * 121.32438 * 0.56199 * 7 5 3 9 9 C 1.54261 * 106.59970 * 221.93785 * 7 5 3 10 10 C 1.54891 * 104.19423 * 336.38720 * 9 7 5 11 11 H 1.09002 * 110.91316 * 279.55516 * 10 9 7 12 12 N 1.46905 * 110.75683 * 156.26031 * 10 9 7 13 13 C 1.46902 * 110.99800 * 91.66899 * 12 10 9 14 14 C 1.50706 * 109.46580 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.54264 * 117.41282 * 45.29152 * 5 3 2 23 23 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47363 * 300.00027 * 1 2 3 25 25 H 1.09006 * 109.47091 * 59.99962 * 1 2 3 26 26 H 1.08999 * 117.46116 * 355.35724 * 6 5 3 27 27 H 1.09000 * 117.46057 * 140.15543 * 6 5 3 28 28 H 1.09001 * 110.48695 * 217.70896 * 9 7 5 29 29 H 1.09000 * 110.49088 * 95.06166 * 9 7 5 30 30 H 1.00898 * 110.99743 * 327.71948 * 12 10 9 31 31 H 1.09000 * 109.47263 * 60.00269 * 13 12 10 32 32 H 1.08993 * 109.47737 * 299.99831 * 13 12 10 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 34 34 H 1.08995 * 110.48817 * 44.90855 * 22 5 3 35 35 H 1.09005 * 110.48793 * 282.27105 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.2917 1.7487 1.2605 7 6 4.2966 2.6291 -0.0208 8 1 3.7460 3.5698 -0.0262 9 6 5.4741 2.4801 -1.0062 10 6 5.7494 0.9563 -1.0415 11 1 6.3416 0.6478 -0.1800 12 7 6.4182 0.5769 -2.2932 13 6 7.8789 0.6096 -2.1405 14 6 8.5289 0.2150 -3.4416 15 1 7.9180 -0.0347 -4.2965 16 6 9.9035 0.1737 -3.5407 17 7 10.4707 -0.1702 -4.6763 18 14 10.9601 0.6062 -2.0623 19 1 11.2514 2.0622 -2.0709 20 1 10.2344 0.2540 -0.8154 21 1 12.2342 -0.1540 -2.1250 22 6 4.3256 0.3501 -0.9743 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.6788 2.0879 2.0955 27 1 5.2136 1.2349 1.5331 28 1 6.3488 3.0174 -0.6395 29 1 5.1915 2.8397 -1.9956 30 1 6.1210 1.1676 -3.0554 31 1 8.1782 -0.0886 -1.3588 32 1 8.1933 1.6169 -1.8677 33 1 11.4378 -0.1989 -4.7462 34 1 3.8575 0.3657 -1.9585 35 1 4.3621 -0.6671 -0.5843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872229958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:29 Heat of formation + Delta-G solvation = -57.082075 kcal Electronic energy + Delta-G solvation = -16947.782057 eV Core-core repulsion = 14139.678351 eV Total energy + Delta-G solvation = -2808.103706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95538 -39.20059 -36.54293 -35.00376 -32.44718 -29.80079 -29.07338 -27.54420 -26.35983 -23.96932 -22.00423 -21.27615 -19.68901 -19.45469 -17.46679 -17.06784 -16.58811 -16.42055 -15.38559 -14.73108 -14.15819 -13.86791 -13.64737 -13.37323 -13.07738 -12.93722 -12.63563 -12.42917 -12.12880 -11.83385 -11.56174 -11.19992 -10.96949 -10.94105 -10.81308 -10.66233 -10.30898 -10.11598 -9.79765 -9.69761 -9.30085 -8.62214 -7.51641 -6.07588 -4.05851 2.00653 2.53388 3.26884 3.34809 3.36532 3.45755 4.30077 4.40174 4.42203 4.63411 4.75059 4.90921 4.98029 5.10828 5.25425 5.26877 5.34010 5.43185 5.48316 5.53687 5.61128 5.87068 5.99408 6.03970 6.09183 6.22840 6.34070 6.39333 6.74671 6.98710 7.57923 7.64443 7.86253 8.28244 8.62182 9.00521 9.54053 11.05744 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.046210 B = 0.004807 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.785068 B = 5823.331615 C = 6108.393600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.508 3.492 4 O -0.512 6.512 5 C -0.158 4.158 6 C -0.124 4.124 7 C -0.118 4.118 8 H 0.120 0.880 9 C -0.129 4.129 10 C 0.080 3.920 11 H 0.083 0.917 12 N -0.670 5.670 13 C 0.164 3.836 14 C -0.518 4.518 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.267 1.267 21 H -0.286 1.286 22 C -0.068 4.068 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.338 0.662 31 H 0.027 0.973 32 H -0.019 1.019 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.792 2.939 12.105 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.352 3.648 4 O -0.400 6.400 5 C -0.159 4.159 6 C -0.160 4.160 7 C -0.136 4.136 8 H 0.138 0.862 9 C -0.168 4.168 10 C -0.032 4.032 11 H 0.101 0.899 12 N -0.299 5.299 13 C 0.037 3.963 14 C -0.556 4.556 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.192 1.192 21 H -0.212 1.212 22 C -0.106 4.106 23 H 0.120 0.880 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.157 0.843 31 H 0.045 0.955 32 H -0.001 1.001 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.872 2.492 12.099 20.113 hybrid contribution 0.458 1.234 0.705 1.494 sum -15.414 3.726 12.804 20.382 Atomic orbital electron populations 1.23279 0.76538 1.03725 1.02404 1.86541 1.23085 1.33158 1.83791 1.22441 0.89883 0.81115 0.71347 1.90642 1.66819 1.36609 1.45970 1.21858 0.87032 1.02659 1.04362 1.23445 1.01542 1.00940 0.90119 1.23748 0.98561 0.93246 0.98088 0.86229 1.22812 0.96430 0.99227 0.98308 1.22567 0.94203 0.91184 0.95239 0.89894 1.60441 1.08631 1.57497 1.03292 1.20042 0.83500 0.94308 0.98470 1.21066 0.91726 1.45995 0.96804 0.90289 1.24909 0.97862 0.94809 0.95737 1.69903 1.10500 1.48479 1.24989 0.86816 0.80163 0.78654 0.83803 1.20342 1.19150 1.21158 1.21836 0.94101 0.97684 0.96985 0.87997 0.92076 0.91894 0.87899 0.87100 0.90721 0.90210 0.84347 0.95531 1.00115 0.92628 0.90226 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.34 10.50 -39.25 -0.41 -4.75 16 3 C 0.51 6.99 7.58 36.01 0.27 7.27 16 4 O -0.51 -8.01 16.54 -18.75 -0.31 -8.32 16 5 C -0.16 -2.03 2.80 -154.54 -0.43 -2.47 16 6 C -0.12 -1.36 9.73 -25.42 -0.25 -1.61 16 7 C -0.12 -1.46 6.76 -88.20 -0.60 -2.06 16 8 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 9 C -0.13 -1.77 6.35 -25.07 -0.16 -1.93 16 10 C 0.08 1.25 2.75 -65.72 -0.18 1.07 16 11 H 0.08 1.31 7.10 -51.93 -0.37 0.94 16 12 N -0.67 -13.22 6.38 -105.88 -0.68 -13.89 16 13 C 0.16 3.86 4.37 -4.97 -0.02 3.84 16 14 C -0.52 -14.60 9.87 -34.44 -0.34 -14.94 16 15 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 18 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.07 -0.95 6.11 -25.08 -0.15 -1.11 16 23 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.11 1.15 7.27 -51.93 -0.38 0.77 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.10 7.77 -51.93 -0.40 0.70 16 30 H 0.34 6.50 8.20 -39.29 -0.32 6.18 16 31 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 32 H -0.02 -0.43 7.57 -51.93 -0.39 -0.83 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 294.49 15.07 4.44 4.44 Total: -1.00 -31.63 294.49 -6.95 -38.58 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.21 Total: 2.74 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.89 Total: -8.69 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.10 Total: -40.60 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.72 Total: -13.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.63 -6.95 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872229958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.501 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds