Wall clock time and date at job start Sun Mar 29 2020 22:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00179 * 2 1 4 4 O 1.20825 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00191 * 180.02562 * 3 2 1 6 6 C 1.53002 * 119.29820 * 250.95113 * 5 3 2 7 7 C 1.53874 * 121.33346 * 179.11814 * 5 3 2 8 8 H 1.09003 * 121.32438 * 0.56199 * 7 5 3 9 9 C 1.54261 * 106.59970 * 221.93785 * 7 5 3 10 10 C 1.54891 * 104.19423 * 336.38720 * 9 7 5 11 11 H 1.09002 * 110.91316 * 279.55516 * 10 9 7 12 12 N 1.46905 * 110.75683 * 156.26031 * 10 9 7 13 13 C 1.46902 * 110.99800 * 91.66899 * 12 10 9 14 14 C 1.50706 * 109.46580 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.54264 * 117.41282 * 45.29152 * 5 3 2 23 23 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47363 * 300.00027 * 1 2 3 25 25 H 1.09006 * 109.47091 * 59.99962 * 1 2 3 26 26 H 1.08999 * 117.46116 * 355.35724 * 6 5 3 27 27 H 1.09000 * 117.46057 * 140.15543 * 6 5 3 28 28 H 1.09001 * 110.48695 * 217.70896 * 9 7 5 29 29 H 1.09000 * 110.49088 * 95.06166 * 9 7 5 30 30 H 1.00898 * 110.99743 * 327.71948 * 12 10 9 31 31 H 1.09000 * 109.47263 * 60.00269 * 13 12 10 32 32 H 1.08993 * 109.47737 * 299.99831 * 13 12 10 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 34 34 H 1.08995 * 110.48817 * 44.90855 * 22 5 3 35 35 H 1.09005 * 110.48793 * 282.27105 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.2917 1.7487 1.2605 7 6 4.2966 2.6291 -0.0208 8 1 3.7460 3.5698 -0.0262 9 6 5.4741 2.4801 -1.0062 10 6 5.7494 0.9563 -1.0415 11 1 6.3416 0.6478 -0.1800 12 7 6.4182 0.5769 -2.2932 13 6 7.8789 0.6096 -2.1405 14 6 8.5289 0.2150 -3.4416 15 1 7.9180 -0.0347 -4.2965 16 6 9.9035 0.1737 -3.5407 17 7 10.4707 -0.1702 -4.6763 18 14 10.9601 0.6062 -2.0623 19 1 11.2514 2.0622 -2.0709 20 1 10.2344 0.2540 -0.8154 21 1 12.2342 -0.1540 -2.1250 22 6 4.3256 0.3501 -0.9743 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.6788 2.0879 2.0955 27 1 5.2136 1.2349 1.5331 28 1 6.3488 3.0174 -0.6395 29 1 5.1915 2.8397 -1.9956 30 1 6.1210 1.1676 -3.0554 31 1 8.1782 -0.0886 -1.3588 32 1 8.1933 1.6169 -1.8677 33 1 11.4378 -0.1989 -4.7462 34 1 3.8575 0.3657 -1.9585 35 1 4.3621 -0.6671 -0.5843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872229958.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:28 Heat of formation + Delta-G solvation = -78.204137 kcal Electronic energy + Delta-G solvation = -16948.697978 eV Core-core repulsion = 14139.678351 eV Total energy + Delta-G solvation = -2809.019628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.98194 -40.26269 -37.58788 -36.55400 -34.47471 -31.32058 -30.05632 -28.41201 -28.12516 -24.98804 -23.39874 -22.90513 -20.84894 -20.46236 -18.89657 -18.47358 -17.87078 -17.38889 -16.90411 -16.09819 -15.65570 -15.11167 -14.84806 -14.71342 -14.44799 -14.10921 -13.99127 -13.86213 -13.40559 -12.94648 -12.85242 -12.57799 -12.47063 -12.17085 -12.03781 -11.84944 -11.78932 -11.60216 -11.37166 -11.13146 -10.79735 -10.70632 -9.08484 -8.27668 -6.32342 0.98088 1.37760 1.40086 1.51076 1.64429 2.36800 2.48633 3.06843 3.20022 3.39915 3.60553 3.71042 4.01807 4.12717 4.26471 4.28730 4.30507 4.37635 4.46311 4.66663 4.70810 4.78786 4.84911 4.89939 4.93203 5.09569 5.14429 5.20062 5.24934 5.29737 5.55966 5.99561 6.58230 6.64312 6.68596 6.79218 7.32845 8.89273 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.046210 B = 0.004807 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.785068 B = 5823.331615 C = 6108.393600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.510 3.490 4 O -0.536 6.536 5 C -0.168 4.168 6 C -0.103 4.103 7 C -0.118 4.118 8 H 0.123 0.877 9 C -0.123 4.123 10 C 0.078 3.922 11 H 0.089 0.911 12 N -0.681 5.681 13 C 0.177 3.823 14 C -0.530 4.530 15 H 0.035 0.965 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.245 1.245 21 H -0.284 1.284 22 C -0.060 4.060 23 H 0.132 0.868 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.338 0.662 31 H 0.028 0.972 32 H -0.009 1.009 33 H 0.267 0.733 34 H 0.068 0.932 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.115 3.437 14.770 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.354 3.646 4 O -0.427 6.427 5 C -0.169 4.169 6 C -0.140 4.140 7 C -0.137 4.137 8 H 0.141 0.859 9 C -0.162 4.162 10 C -0.033 4.033 11 H 0.107 0.893 12 N -0.310 5.310 13 C 0.048 3.952 14 C -0.568 4.568 15 H 0.053 0.947 16 C -0.191 4.191 17 N -0.590 5.590 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.169 1.169 21 H -0.209 1.209 22 C -0.099 4.099 23 H 0.150 0.850 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.046 0.954 32 H 0.009 0.991 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.233 2.982 14.777 22.153 hybrid contribution 0.433 1.018 -0.215 1.127 sum -15.800 4.000 14.561 21.856 Atomic orbital electron populations 1.23595 0.74625 1.05831 1.02598 1.86526 1.25042 1.32480 1.83321 1.22549 0.90143 0.81140 0.70718 1.90629 1.67361 1.37359 1.47319 1.21820 0.86770 1.02553 1.05778 1.23612 1.01650 0.99113 0.89587 1.23697 0.97718 0.93268 0.98983 0.85863 1.22687 0.97266 0.97556 0.98695 1.22623 0.94564 0.92818 0.93263 0.89315 1.60323 1.06826 1.58477 1.05356 1.19774 0.85446 0.94387 0.95577 1.21384 0.91959 1.45771 0.97684 0.94672 1.25913 0.99470 0.94576 0.99140 1.70067 1.11066 1.50154 1.27751 0.85635 0.77911 0.78818 0.80068 1.19109 1.16882 1.20948 1.21681 0.93160 0.98035 0.96991 0.85012 0.91517 0.92112 0.86174 0.85943 0.90291 0.90721 0.84392 0.95432 0.99123 0.92419 0.91302 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.32 10.50 -51.40 -0.54 -8.86 16 3 C 0.51 13.26 7.58 71.24 0.54 13.80 16 4 O -0.54 -16.11 16.54 21.97 0.36 -15.75 16 5 C -0.17 -4.00 2.80 -52.20 -0.15 -4.15 16 6 C -0.10 -1.94 9.73 31.44 0.31 -1.63 16 7 C -0.12 -2.66 6.76 -9.22 -0.06 -2.72 16 8 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 9 C -0.12 -3.16 6.35 31.67 0.20 -2.96 16 10 C 0.08 2.31 2.75 46.20 0.13 2.44 16 11 H 0.09 2.55 7.10 -2.39 -0.02 2.53 16 12 N -0.68 -26.54 6.38 -488.91 -3.12 -29.66 16 13 C 0.18 8.11 4.37 85.56 0.37 8.49 16 14 C -0.53 -30.40 9.87 25.60 0.25 -30.14 16 15 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 16 C 0.01 0.36 5.47 84.66 0.46 0.83 16 17 N -0.95 -59.30 13.96 21.45 0.30 -59.01 16 18 Si 0.95 43.17 27.47 68.60 1.88 45.05 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.25 -10.20 6.54 99.48 0.65 -9.55 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 C -0.06 -1.62 6.11 31.67 0.19 -1.43 16 23 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 25 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 26 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.12 2.06 7.27 -2.39 -0.02 2.04 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.99 7.77 -2.39 -0.02 1.97 16 30 H 0.34 13.10 8.20 -89.70 -0.74 12.37 16 31 H 0.03 1.27 7.14 -2.39 -0.02 1.25 16 32 H -0.01 -0.39 7.57 -2.39 -0.02 -0.41 16 33 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -68.57 294.49 2.63 -65.95 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.29 Total: 18.14 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 3.45 Total: -15.87 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -2.82 Total: -88.67 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.18 Total: -24.61 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Total: -68.57 2.63 -65.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872229958.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.258 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds