Wall clock time and date at job start Sun Mar 29 2020 22:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46903 * 111.00408 * 176.04515 * 12 2 1 14 14 C 1.46897 * 111.00175 * 300.00375 * 12 2 1 15 15 C 1.53005 * 109.47498 * 169.99794 * 14 12 2 16 16 C 1.50698 * 109.46982 * 179.97438 * 15 14 12 17 17 N 1.31069 * 126.65788 * 90.02546 * 16 15 14 18 18 N 1.28841 * 107.99075 * 179.97438 * 17 16 15 19 19 N 1.28737 * 109.39766 * 359.97438 * 18 17 16 20 20 N 1.29026 * 108.80698 * 359.74457 * 19 18 17 21 21 C 1.46501 * 126.43748 * 180.24600 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.46799 * 60.00117 * 13 12 2 27 27 H 1.08994 * 109.47282 * 180.02562 * 13 12 2 28 28 H 1.08999 * 109.46910 * 300.00279 * 13 12 2 29 29 H 1.09004 * 109.47033 * 289.99910 * 14 12 2 30 30 H 1.08999 * 109.47167 * 49.99404 * 14 12 2 31 31 H 1.08997 * 109.46462 * 299.99915 * 15 14 12 32 32 H 1.08999 * 109.47230 * 59.99648 * 15 14 12 33 33 H 1.09005 * 109.47057 * 270.18049 * 21 20 19 34 34 H 1.09000 * 109.47108 * 30.18018 * 21 20 19 35 35 H 1.08998 * 109.46864 * 150.18183 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0265 2.4210 15 6 1.8628 -0.9045 3.6341 16 6 1.3801 -0.2209 4.8874 17 7 0.1963 -0.3398 5.4373 18 7 0.1715 0.3993 6.4923 19 7 1.3090 0.9863 6.6299 20 7 2.0832 0.6250 5.6631 21 6 3.4662 1.0576 5.4477 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 3.9187 0.2051 1.1591 27 1 3.8210 -1.3117 2.0857 28 1 3.8030 -1.3531 0.3066 29 1 2.0519 0.9345 2.5280 30 1 0.4723 0.1323 2.3563 31 1 1.3596 -1.8654 3.5270 32 1 2.9392 -1.0633 3.6988 33 1 3.4738 1.9577 4.8329 34 1 3.9343 1.2701 6.4089 35 1 4.0195 0.2668 4.9410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878188044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:14 Heat of formation + Delta-G solvation = 124.086076 kcal Electronic energy + Delta-G solvation = -17231.355846 eV Core-core repulsion = 14495.693682 eV Total energy + Delta-G solvation = -2735.662163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.14320 -37.54299 -35.70290 -34.05618 -32.61509 -30.18849 -29.06233 -28.32479 -25.95212 -24.47688 -23.46533 -22.82087 -21.20755 -19.47523 -17.50957 -17.21803 -16.35357 -15.65350 -15.10049 -14.60020 -14.06202 -13.95572 -13.72180 -13.37030 -13.11207 -12.50273 -12.36731 -12.13736 -12.06541 -11.48859 -11.23059 -11.11224 -10.96108 -10.90422 -10.76641 -10.47324 -10.18867 -10.18353 -10.05690 -9.73759 -8.95346 -8.48107 -7.36060 -6.06827 -4.12283 1.22408 1.95319 2.27663 3.28086 3.33446 3.35513 3.95329 4.12506 4.36543 4.58430 4.66321 4.94472 4.98272 5.22004 5.24734 5.32361 5.45882 5.63104 5.71474 5.91037 6.03376 6.15264 6.21791 6.28970 6.62225 6.79691 6.99888 7.06343 7.41868 7.61470 7.75685 8.08775 8.22933 8.47573 8.63392 8.93128 9.53101 10.99945 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048481 B = 0.005056 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.406132 B = 5536.321820 C = 5788.050908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.214 3.786 3 H -0.002 1.002 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.534 5.534 13 C 0.033 3.967 14 C 0.057 3.943 15 C -0.038 4.038 16 C 0.200 3.800 17 N -0.302 5.302 18 N -0.079 5.079 19 N -0.106 5.106 20 N -0.312 5.312 21 C 0.079 3.921 22 H 0.009 0.991 23 H 0.037 0.963 24 H 0.086 0.914 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.020 0.980 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 -0.453 11.798 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.259 5.259 13 C -0.116 4.116 14 C -0.073 4.073 15 C -0.079 4.079 16 C -0.078 4.078 17 N -0.151 5.151 18 N -0.073 5.073 19 N -0.091 5.091 20 N -0.114 5.114 21 C -0.062 4.062 22 H 0.027 0.973 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.857 -0.514 12.638 13.938 hybrid contribution 1.462 0.439 -1.435 2.095 sum 7.319 -0.076 11.203 13.382 Atomic orbital electron populations 1.21879 0.97553 0.99939 0.99978 1.19257 0.92462 0.91910 0.85528 0.98405 1.21084 1.31374 1.12410 0.89649 0.91802 1.24933 0.95123 0.95045 0.99071 1.69876 1.36676 1.22938 1.23656 0.86568 0.79001 0.79819 0.82052 1.20138 1.21352 1.20360 1.62125 1.09268 1.52632 1.01851 1.22291 0.88787 0.99184 1.01293 1.22045 1.02224 0.93512 0.89526 1.20388 1.01716 1.00069 0.85714 1.26313 0.88890 0.94560 0.98052 1.75063 1.16447 1.18915 1.04703 1.78579 1.11718 1.05625 1.11379 1.78822 0.98902 1.20668 1.10754 1.48400 1.14521 1.31015 1.17463 1.22390 0.75318 1.03181 1.05347 0.97256 0.94385 0.89577 0.92839 0.96919 0.93843 0.90240 0.96142 0.89631 0.86715 0.89365 0.88361 0.87651 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.76 37.16 0.33 -2.91 16 2 C 0.21 5.14 2.06 -68.87 -0.14 4.99 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.47 16 4 C -0.51 -13.21 7.93 -34.44 -0.27 -13.48 16 5 H 0.06 1.64 6.39 -52.49 -0.34 1.30 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 N -0.53 -10.37 4.62 -236.29 -1.09 -11.47 16 13 C 0.03 0.55 9.05 60.07 0.54 1.10 16 14 C 0.06 0.93 4.76 -3.82 -0.02 0.91 16 15 C -0.04 -0.48 5.49 -27.88 -0.15 -0.64 16 16 C 0.20 2.78 7.39 -155.44 -1.15 1.64 16 17 N -0.30 -5.10 12.36 32.70 0.40 -4.69 16 18 N -0.08 -1.35 13.43 60.35 0.81 -0.54 16 19 N -0.11 -1.56 13.29 60.35 0.80 -0.76 16 20 N -0.31 -3.79 3.75 -65.03 -0.24 -4.03 16 21 C 0.08 0.52 11.25 59.85 0.67 1.19 16 22 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.56 6.30 -51.93 -0.33 0.23 16 28 H 0.08 1.47 6.23 -51.93 -0.32 1.15 16 29 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 30 H 0.09 1.56 5.83 -51.93 -0.30 1.26 16 31 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.09 0.88 5.49 -51.93 -0.29 0.59 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.48 7.13 -51.93 -0.37 0.11 16 LS Contribution 286.54 15.07 4.32 4.32 Total: -1.00 -31.00 286.54 -4.36 -35.36 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -4.67 Total: -3.90 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.29 Total: -5.69 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 1.31 Total: -45.67 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.00 -4.36 -35.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878188044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.446 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds