Wall clock time and date at job start Sun Mar 29 2020 22:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46903 * 111.00408 * 176.04515 * 12 2 1 14 14 C 1.46897 * 111.00175 * 300.00375 * 12 2 1 15 15 C 1.53005 * 109.47498 * 169.99794 * 14 12 2 16 16 C 1.50698 * 109.46982 * 179.97438 * 15 14 12 17 17 N 1.31069 * 126.65788 * 90.02546 * 16 15 14 18 18 N 1.28841 * 107.99075 * 179.97438 * 17 16 15 19 19 N 1.28737 * 109.39766 * 359.97438 * 18 17 16 20 20 N 1.29026 * 108.80698 * 359.74457 * 19 18 17 21 21 C 1.46501 * 126.43748 * 180.24600 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.46799 * 60.00117 * 13 12 2 27 27 H 1.08994 * 109.47282 * 180.02562 * 13 12 2 28 28 H 1.08999 * 109.46910 * 300.00279 * 13 12 2 29 29 H 1.09004 * 109.47033 * 289.99910 * 14 12 2 30 30 H 1.08999 * 109.47167 * 49.99404 * 14 12 2 31 31 H 1.08997 * 109.46462 * 299.99915 * 15 14 12 32 32 H 1.08999 * 109.47230 * 59.99648 * 15 14 12 33 33 H 1.09005 * 109.47057 * 270.18049 * 21 20 19 34 34 H 1.09000 * 109.47108 * 30.18018 * 21 20 19 35 35 H 1.08998 * 109.46864 * 150.18183 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0265 2.4210 15 6 1.8628 -0.9045 3.6341 16 6 1.3801 -0.2209 4.8874 17 7 0.1963 -0.3398 5.4373 18 7 0.1715 0.3993 6.4923 19 7 1.3090 0.9863 6.6299 20 7 2.0832 0.6250 5.6631 21 6 3.4662 1.0576 5.4477 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 3.9187 0.2051 1.1591 27 1 3.8210 -1.3117 2.0857 28 1 3.8030 -1.3531 0.3066 29 1 2.0519 0.9345 2.5280 30 1 0.4723 0.1323 2.3563 31 1 1.3596 -1.8654 3.5270 32 1 2.9392 -1.0633 3.6988 33 1 3.4738 1.9577 4.8329 34 1 3.9343 1.2701 6.4089 35 1 4.0195 0.2668 4.9410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878188044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:14 Heat of formation + Delta-G solvation = 101.748330 kcal Electronic energy + Delta-G solvation = -17232.324483 eV Core-core repulsion = 14495.693682 eV Total energy + Delta-G solvation = -2736.630801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.23008 -39.06193 -36.70133 -35.51411 -34.24812 -31.65840 -30.54256 -29.19323 -27.61322 -26.12774 -24.63150 -24.11593 -22.45073 -21.12931 -18.43816 -18.39401 -18.16397 -17.18121 -16.38608 -16.17246 -15.37123 -15.17183 -14.78474 -14.60751 -14.40309 -13.97278 -13.58177 -13.37616 -13.24322 -12.92531 -12.89339 -12.68463 -12.57383 -12.26033 -12.07212 -12.02378 -11.93521 -11.87039 -11.59031 -11.01544 -10.82939 -10.48505 -8.94428 -8.08718 -6.20520 0.17328 1.09187 1.13545 1.46148 1.48220 1.55118 2.44603 2.87937 3.20596 3.26498 3.55456 3.83786 4.01752 4.22466 4.24494 4.31469 4.48182 4.56880 4.62495 4.75932 4.79027 4.85938 4.96770 5.02314 5.04997 5.14164 5.26254 5.36780 5.51822 5.74754 5.80311 6.27065 6.39575 6.72199 6.94577 7.49079 7.51299 8.97217 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048481 B = 0.005056 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.406132 B = 5536.321820 C = 5788.050908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.218 3.782 3 H -0.035 1.035 4 C -0.516 4.516 5 H 0.066 0.934 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.540 5.540 13 C 0.032 3.968 14 C 0.061 3.939 15 C -0.022 4.022 16 C 0.199 3.801 17 N -0.335 5.335 18 N -0.112 5.112 19 N -0.108 5.108 20 N -0.297 5.297 21 C 0.061 3.939 22 H 0.024 0.976 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.260 0.740 26 H 0.012 0.988 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -1.301 12.434 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.111 3.889 3 H -0.018 1.018 4 C -0.555 4.555 5 H 0.085 0.915 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.265 5.265 13 C -0.115 4.115 14 C -0.068 4.068 15 C -0.063 4.063 16 C -0.079 4.079 17 N -0.185 5.185 18 N -0.106 5.106 19 N -0.095 5.095 20 N -0.100 5.100 21 C -0.078 4.078 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.049 -1.367 13.295 15.602 hybrid contribution 0.865 0.756 -1.580 1.954 sum 8.915 -0.610 11.715 14.734 Atomic orbital electron populations 1.21710 0.97939 0.99304 0.99369 1.19012 0.92185 0.90334 0.87348 1.01763 1.21423 1.31050 1.12372 0.90632 0.91549 1.25724 0.95393 0.95725 1.02035 1.70020 1.37902 1.24360 1.24047 0.85588 0.78851 0.78615 0.78429 1.19745 1.21528 1.19310 1.62003 1.11139 1.52107 1.01229 1.22358 0.86855 0.99512 1.02812 1.21960 1.00675 0.94564 0.89634 1.20271 1.04022 0.98702 0.83263 1.26337 0.88441 0.94858 0.98313 1.74969 1.18383 1.19834 1.05269 1.78557 1.12968 1.06859 1.12230 1.78727 0.98809 1.20389 1.11555 1.48772 1.15724 1.29532 1.15967 1.23002 0.72667 1.04716 1.07379 0.95699 0.94834 0.92373 0.93075 0.96910 0.88979 0.92249 0.95464 0.92144 0.86828 0.85466 0.87247 0.85436 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.76 71.98 0.63 -5.44 16 2 C 0.22 10.51 2.06 44.17 0.09 10.61 16 3 H -0.04 -1.89 8.14 -2.39 -0.02 -1.91 16 4 C -0.52 -26.88 7.93 25.60 0.20 -26.68 16 5 H 0.07 3.35 6.39 -2.91 -0.02 3.34 16 6 C 0.01 0.52 5.30 84.65 0.45 0.97 16 7 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 8 Si 0.96 42.11 29.54 68.60 2.03 44.14 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 12 N -0.54 -20.14 4.62 -901.48 -4.17 -24.31 16 13 C 0.03 1.00 9.05 127.69 1.16 2.15 16 14 C 0.06 1.89 4.76 86.31 0.41 2.30 16 15 C -0.02 -0.49 5.49 29.85 0.16 -0.33 16 16 C 0.20 5.11 7.39 138.14 1.02 6.13 16 17 N -0.33 -11.08 12.36 -50.46 -0.62 -11.70 16 18 N -0.11 -3.80 13.43 37.01 0.50 -3.30 16 19 N -0.11 -3.05 13.29 37.02 0.49 -2.56 16 20 N -0.30 -6.43 3.75 -359.64 -1.35 -7.77 16 21 C 0.06 0.56 11.25 127.77 1.44 1.99 16 22 H 0.02 1.08 6.20 -2.39 -0.01 1.07 16 23 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.09 1.91 6.30 -2.39 -0.02 1.89 16 28 H 0.06 2.07 6.23 -2.39 -0.01 2.06 16 29 H 0.03 0.81 8.12 -2.38 -0.02 0.79 16 30 H 0.06 2.17 5.83 -2.39 -0.01 2.15 16 31 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 32 H 0.13 1.82 5.49 -2.39 -0.01 1.81 16 33 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.14 0.48 7.13 -2.39 -0.02 0.46 16 Total: -1.00 -68.94 286.54 3.77 -65.17 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: 1.09 Total: 0.63 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 5.56 Total: -8.30 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.91 Total: -101.64 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -68.94 3.77 -65.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878188044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.920 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds