Wall clock time and date at job start Sun Mar 29 2020 22:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 H 1.09005 * 109.47296 * 184.45641 * 3 2 1 5 5 C 1.50699 * 109.46875 * 304.44902 * 3 2 1 6 6 H 1.08005 * 119.99608 * 115.15219 * 5 3 2 7 7 C 1.37876 * 120.00091 * 295.15339 * 5 3 2 8 8 N 1.31517 * 120.00142 * 352.96839 * 7 5 3 9 9 Si 1.86808 * 120.00068 * 172.97676 * 7 5 3 10 10 H 1.48494 * 109.47161 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.46600 * 299.99679 * 9 7 5 12 12 H 1.48497 * 109.47262 * 59.99521 * 9 7 5 13 13 N 1.46896 * 109.47518 * 64.45231 * 3 2 1 14 14 C 1.46898 * 111.00377 * 85.30164 * 13 3 2 15 15 C 1.53004 * 109.47206 * 184.98519 * 14 13 3 16 16 C 1.50700 * 109.46753 * 180.02562 * 15 14 13 17 17 N 1.31070 * 126.66315 * 90.02343 * 16 15 14 18 18 N 1.28845 * 107.99319 * 179.97438 * 17 16 15 19 19 N 1.28739 * 109.39549 * 0.02562 * 18 17 16 20 20 N 1.29022 * 108.80935 * 359.74420 * 19 18 17 21 21 C 1.46504 * 126.43722 * 180.24873 * 20 19 18 22 22 H 1.08990 * 109.47199 * 185.54003 * 1 2 3 23 23 H 1.08995 * 109.47334 * 305.54523 * 1 2 3 24 24 H 1.09001 * 109.46568 * 65.54562 * 1 2 3 25 25 H 1.08993 * 109.47731 * 239.99367 * 2 1 3 26 26 H 1.09009 * 109.46600 * 119.99170 * 2 1 3 27 27 H 0.97000 * 119.99706 * 356.31408 * 8 7 5 28 28 H 1.00901 * 111.00379 * 209.26084 * 13 3 2 29 29 H 1.09004 * 109.47018 * 304.98236 * 14 13 3 30 30 H 1.09000 * 109.47086 * 64.97990 * 14 13 3 31 31 H 1.08997 * 109.47150 * 299.99463 * 15 14 13 32 32 H 1.09000 * 109.47023 * 59.99883 * 15 14 13 33 33 H 1.08999 * 109.47231 * 270.17465 * 21 20 19 34 34 H 1.09001 * 109.47061 * 30.18337 * 21 20 19 35 35 H 1.09002 * 109.46486 * 150.17823 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0799 5 6 1.4497 2.1839 -1.1717 6 1 0.7755 3.0108 -1.0032 7 6 1.7702 1.8068 -2.4585 8 7 2.6943 0.8942 -2.6655 9 14 0.8921 2.5923 -3.9082 10 1 1.4147 2.0179 -5.1739 11 1 -0.5652 2.3245 -3.8083 12 1 1.1280 4.0584 -3.8946 13 7 1.6402 2.1033 1.2495 14 6 2.6089 1.8347 2.3206 15 6 2.0975 2.4328 3.6327 16 6 3.0917 2.1577 4.7313 17 7 4.1001 2.9177 5.0826 18 7 4.7120 2.3409 6.0588 19 7 4.1203 1.2324 6.3390 20 7 3.1134 1.0862 5.5457 21 6 2.1723 -0.0365 5.5319 22 1 -0.3633 -1.0228 0.0992 23 1 -0.3634 0.5974 0.8361 24 1 -0.3632 0.4254 -0.9355 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8902 27 1 3.1878 0.5251 -1.9163 28 1 1.5197 3.0955 1.1114 29 1 2.7333 0.7580 2.4363 30 1 3.5677 2.2858 2.0649 31 1 1.9731 3.5095 3.5171 32 1 1.1387 1.9816 3.8883 33 1 2.5411 -0.8114 4.8598 34 1 2.0775 -0.4435 6.5386 35 1 1.1982 0.3102 5.1869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878698089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:34 Heat of formation + Delta-G solvation = 103.333426 kcal Electronic energy + Delta-G solvation = -17102.253928 eV Core-core repulsion = 14365.691862 eV Total energy + Delta-G solvation = -2736.562066 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.19949 -37.05669 -35.76284 -34.49562 -32.44546 -30.96908 -29.32082 -28.26875 -25.60900 -23.68575 -23.48335 -22.94560 -21.36349 -19.41753 -17.53575 -17.32809 -17.03550 -15.24759 -15.24050 -14.19677 -14.17408 -13.92157 -13.81999 -13.54635 -13.14750 -12.67000 -12.53613 -12.21505 -11.86462 -11.59786 -11.29356 -11.21879 -11.08654 -10.94443 -10.82591 -10.21428 -10.16824 -10.14113 -9.91208 -9.78952 -8.60268 -8.40597 -7.59616 -6.42321 -4.14192 1.17073 1.91258 2.20961 3.40079 3.41308 3.59849 3.89303 4.09791 4.46645 4.56638 4.65510 4.95149 5.03042 5.19810 5.27013 5.31447 5.46316 5.56199 5.65865 5.97784 6.06795 6.12067 6.19469 6.33269 6.50386 6.83805 6.92695 7.16082 7.36024 7.44675 7.73554 7.94610 8.37275 8.46456 8.57282 8.78047 9.56145 10.94351 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.005024 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.831774 B = 5571.849774 C = 5852.586262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C 0.204 3.796 4 H -0.007 1.007 5 C -0.596 4.596 6 H 0.055 0.945 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 1.064 2.936 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.678 5.678 14 C 0.065 3.935 15 C -0.037 4.037 16 C 0.198 3.802 17 N -0.305 5.305 18 N -0.079 5.079 19 N -0.104 5.104 20 N -0.310 5.310 21 C 0.078 3.922 22 H 0.016 0.984 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.270 0.730 28 H 0.338 0.662 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -1.888 12.781 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C 0.096 3.904 4 H 0.011 0.989 5 C -0.634 4.634 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.544 5.544 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.309 5.309 14 C -0.067 4.067 15 C -0.078 4.078 16 C -0.080 4.080 17 N -0.154 5.154 18 N -0.073 5.073 19 N -0.090 5.090 20 N -0.111 5.111 21 C -0.063 4.063 22 H 0.035 0.965 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.855 -2.121 12.106 12.881 hybrid contribution 0.134 0.075 1.007 1.019 sum -3.721 -2.046 13.114 13.784 Atomic orbital electron populations 1.21421 0.96358 0.97485 1.02319 1.21491 0.96440 0.98191 0.98279 1.19241 0.93291 0.91714 0.86113 0.98923 1.21912 1.31269 1.18508 0.91740 0.92695 1.25706 0.96301 0.95856 1.00141 1.70806 1.21093 1.26935 1.35565 0.83606 0.75720 0.75570 0.75839 1.20868 1.21334 1.21498 1.60572 1.45915 1.16552 1.07856 1.21814 0.94732 0.99837 0.90286 1.20297 0.93833 1.04506 0.89157 1.26256 0.99070 0.85629 0.97061 1.75045 1.05705 1.25009 1.09671 1.78581 1.20077 0.99654 1.09017 1.78829 0.98376 1.16177 1.15609 1.48404 1.21303 1.18651 1.22781 1.22430 0.91414 0.86254 1.06219 0.96494 0.93039 0.92335 0.92297 0.96416 0.91889 0.84398 0.91836 0.95154 0.87702 0.88403 0.88261 0.87660 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 9.43 37.16 0.35 -2.04 16 2 C -0.11 -2.30 5.51 -26.73 -0.15 -2.44 16 3 C 0.20 4.69 1.93 -68.87 -0.13 4.56 16 4 H -0.01 -0.17 7.22 -51.93 -0.37 -0.55 16 5 C -0.60 -15.28 7.13 -34.44 -0.25 -15.52 16 6 H 0.05 1.41 7.67 -52.48 -0.40 1.00 16 7 C 0.02 0.67 5.26 -17.82 -0.09 0.58 16 8 N -0.91 -25.99 12.95 55.43 0.72 -25.27 16 9 Si 1.06 23.98 29.91 -169.99 -5.08 18.90 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 13 N -0.68 -12.46 5.62 -107.95 -0.61 -13.07 16 14 C 0.06 1.01 5.44 -3.82 -0.02 0.99 16 15 C -0.04 -0.44 5.86 -27.88 -0.16 -0.60 16 16 C 0.20 2.68 7.39 -155.43 -1.15 1.53 16 17 N -0.30 -5.04 12.36 32.70 0.40 -4.64 16 18 N -0.08 -1.34 13.43 60.35 0.81 -0.53 16 19 N -0.10 -1.53 13.29 60.35 0.80 -0.72 16 20 N -0.31 -3.70 3.75 -65.02 -0.24 -3.94 16 21 C 0.08 0.52 11.25 59.85 0.67 1.19 16 22 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.05 0.98 7.59 -51.93 -0.39 0.58 16 24 H 0.06 1.31 7.31 -51.93 -0.38 0.93 16 25 H 0.06 1.44 6.35 -51.93 -0.33 1.11 16 26 H 0.02 0.34 7.33 -51.92 -0.38 -0.04 16 27 H 0.27 7.72 6.03 -40.82 -0.25 7.48 16 28 H 0.34 6.20 8.30 -39.29 -0.33 5.88 16 29 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 0.94 7.16 -51.93 -0.37 0.57 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.51 7.14 -51.93 -0.37 0.14 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -31.12 291.91 -4.59 -35.72 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.86 Total: 0.94 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.93 Total: -11.78 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 1.88 Total: -48.17 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.08 Total: 18.90 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.12 -4.59 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878698089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.052 kcal (2) G-P(sol) polarization free energy of solvation -31.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds