Wall clock time and date at job start Sun Mar 29 2020 22:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 H 1.09005 * 109.47296 * 184.45641 * 3 2 1 5 5 C 1.50699 * 109.46875 * 304.44902 * 3 2 1 6 6 H 1.08005 * 119.99608 * 115.15219 * 5 3 2 7 7 C 1.37876 * 120.00091 * 295.15339 * 5 3 2 8 8 N 1.31517 * 120.00142 * 352.96839 * 7 5 3 9 9 Si 1.86808 * 120.00068 * 172.97676 * 7 5 3 10 10 H 1.48494 * 109.47161 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.46600 * 299.99679 * 9 7 5 12 12 H 1.48497 * 109.47262 * 59.99521 * 9 7 5 13 13 N 1.46896 * 109.47518 * 64.45231 * 3 2 1 14 14 C 1.46898 * 111.00377 * 85.30164 * 13 3 2 15 15 C 1.53004 * 109.47206 * 184.98519 * 14 13 3 16 16 C 1.50700 * 109.46753 * 180.02562 * 15 14 13 17 17 N 1.31070 * 126.66315 * 90.02343 * 16 15 14 18 18 N 1.28845 * 107.99319 * 179.97438 * 17 16 15 19 19 N 1.28739 * 109.39549 * 0.02562 * 18 17 16 20 20 N 1.29022 * 108.80935 * 359.74420 * 19 18 17 21 21 C 1.46504 * 126.43722 * 180.24873 * 20 19 18 22 22 H 1.08990 * 109.47199 * 185.54003 * 1 2 3 23 23 H 1.08995 * 109.47334 * 305.54523 * 1 2 3 24 24 H 1.09001 * 109.46568 * 65.54562 * 1 2 3 25 25 H 1.08993 * 109.47731 * 239.99367 * 2 1 3 26 26 H 1.09009 * 109.46600 * 119.99170 * 2 1 3 27 27 H 0.97000 * 119.99706 * 356.31408 * 8 7 5 28 28 H 1.00901 * 111.00379 * 209.26084 * 13 3 2 29 29 H 1.09004 * 109.47018 * 304.98236 * 14 13 3 30 30 H 1.09000 * 109.47086 * 64.97990 * 14 13 3 31 31 H 1.08997 * 109.47150 * 299.99463 * 15 14 13 32 32 H 1.09000 * 109.47023 * 59.99883 * 15 14 13 33 33 H 1.08999 * 109.47231 * 270.17465 * 21 20 19 34 34 H 1.09001 * 109.47061 * 30.18337 * 21 20 19 35 35 H 1.09002 * 109.46486 * 150.17823 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0799 5 6 1.4497 2.1839 -1.1717 6 1 0.7755 3.0108 -1.0032 7 6 1.7702 1.8068 -2.4585 8 7 2.6943 0.8942 -2.6655 9 14 0.8921 2.5923 -3.9082 10 1 1.4147 2.0179 -5.1739 11 1 -0.5652 2.3245 -3.8083 12 1 1.1280 4.0584 -3.8946 13 7 1.6402 2.1033 1.2495 14 6 2.6089 1.8347 2.3206 15 6 2.0975 2.4328 3.6327 16 6 3.0917 2.1577 4.7313 17 7 4.1001 2.9177 5.0826 18 7 4.7120 2.3409 6.0588 19 7 4.1203 1.2324 6.3390 20 7 3.1134 1.0862 5.5457 21 6 2.1723 -0.0365 5.5319 22 1 -0.3633 -1.0228 0.0992 23 1 -0.3634 0.5974 0.8361 24 1 -0.3632 0.4254 -0.9355 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5138 0.8902 27 1 3.1878 0.5251 -1.9163 28 1 1.5197 3.0955 1.1114 29 1 2.7333 0.7580 2.4363 30 1 3.5677 2.2858 2.0649 31 1 1.9731 3.5095 3.5171 32 1 1.1387 1.9816 3.8883 33 1 2.5411 -0.8114 4.8598 34 1 2.0775 -0.4435 6.5386 35 1 1.1982 0.3102 5.1869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878698089.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:34 Heat of formation + Delta-G solvation = 81.136210 kcal Electronic energy + Delta-G solvation = -17103.216472 eV Core-core repulsion = 14365.691862 eV Total energy + Delta-G solvation = -2737.524609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.27223 -38.64514 -36.77967 -35.87471 -34.00078 -32.63227 -30.52281 -29.17340 -27.35182 -25.44040 -24.68543 -24.16045 -22.47484 -21.19214 -18.98472 -18.43023 -18.26925 -16.67784 -16.47036 -15.79940 -15.62139 -15.34822 -14.97938 -14.62651 -14.40386 -14.17494 -13.71576 -13.26276 -13.20925 -13.14374 -13.00627 -12.61324 -12.44215 -12.26619 -11.94033 -11.90105 -11.85099 -11.77408 -11.54288 -11.07311 -10.55556 -10.38363 -9.21270 -8.53676 -6.25171 0.13452 1.04682 1.09764 1.58133 1.64159 1.82421 2.60447 2.85399 3.23116 3.25640 3.63059 3.84943 4.05379 4.13712 4.21706 4.31721 4.43825 4.51601 4.56774 4.61279 4.73001 4.78864 4.85106 4.91834 5.10478 5.20309 5.24509 5.45011 5.57826 5.77218 5.91483 6.10617 6.49396 6.59436 6.81190 7.46518 7.53458 8.83253 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.005024 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.831774 B = 5571.849774 C = 5852.586262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.206 3.794 4 H -0.046 1.046 5 C -0.596 4.596 6 H 0.056 0.944 7 C -0.024 4.024 8 N -0.938 5.938 9 Si 1.106 2.894 10 H -0.292 1.292 11 H -0.269 1.269 12 H -0.274 1.274 13 N -0.663 5.663 14 C 0.071 3.929 15 C -0.021 4.021 16 C 0.197 3.803 17 N -0.337 5.337 18 N -0.113 5.113 19 N -0.108 5.108 20 N -0.296 5.296 21 C 0.061 3.939 22 H 0.041 0.959 23 H 0.067 0.933 24 H 0.030 0.970 25 H 0.025 0.975 26 H 0.040 0.960 27 H 0.257 0.743 28 H 0.340 0.660 29 H 0.067 0.933 30 H 0.004 0.996 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 -2.161 13.797 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.097 3.903 4 H -0.028 1.028 5 C -0.634 4.634 6 H 0.074 0.926 7 C -0.223 4.223 8 N -0.576 5.576 9 Si 0.930 3.070 10 H -0.218 1.218 11 H -0.195 1.195 12 H -0.199 1.199 13 N -0.294 5.294 14 C -0.061 4.061 15 C -0.062 4.062 16 C -0.081 4.081 17 N -0.187 5.187 18 N -0.107 5.107 19 N -0.094 5.094 20 N -0.098 5.098 21 C -0.077 4.077 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.098 -2.398 13.157 14.699 hybrid contribution 0.815 0.099 0.758 1.117 sum -5.284 -2.299 13.915 15.061 Atomic orbital electron populations 1.21314 0.94639 0.99175 1.01437 1.21375 0.97796 0.96970 0.97772 1.19080 0.90814 0.92864 0.87513 1.02818 1.22238 1.30311 1.18192 0.92647 0.92613 1.26947 0.96349 0.95811 1.03210 1.70917 1.22753 1.28853 1.35049 0.83056 0.75667 0.75537 0.72787 1.21819 1.19469 1.19919 1.60495 1.46132 1.16328 1.06413 1.21767 0.93080 1.00155 0.91061 1.20205 0.94512 1.04997 0.86453 1.26352 0.98595 0.85791 0.97395 1.74951 1.06978 1.26558 1.10236 1.78556 1.21378 1.00720 1.10036 1.78734 0.98997 1.15590 1.16122 1.48774 1.20757 1.19034 1.21243 1.23018 0.91407 0.85107 1.08210 0.94021 0.91449 0.95058 0.95587 0.94134 0.93279 0.84265 0.91483 0.97754 0.87052 0.84829 0.87172 0.85493 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 9.43 71.98 0.68 -3.44 16 2 C -0.10 -4.29 5.51 30.59 0.17 -4.12 16 3 C 0.21 9.43 1.93 44.17 0.09 9.52 16 4 H -0.05 -2.42 7.22 -2.38 -0.02 -2.44 16 5 C -0.60 -30.40 7.13 25.60 0.18 -30.22 16 6 H 0.06 2.79 7.67 -2.91 -0.02 2.77 16 7 C -0.02 -1.31 5.26 84.65 0.45 -0.86 16 8 N -0.94 -54.93 12.95 21.45 0.28 -54.65 16 9 Si 1.11 47.97 29.91 68.60 2.05 50.02 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 N -0.66 -23.25 5.62 -495.45 -2.78 -26.03 16 14 C 0.07 2.08 5.44 86.30 0.47 2.54 16 15 C -0.02 -0.44 5.86 29.85 0.17 -0.27 16 16 C 0.20 4.95 7.39 138.13 1.02 5.97 16 17 N -0.34 -11.00 12.36 -50.45 -0.62 -11.62 16 18 N -0.11 -3.80 13.43 37.01 0.50 -3.31 16 19 N -0.11 -3.03 13.29 37.02 0.49 -2.54 16 20 N -0.30 -6.35 3.75 -359.63 -1.35 -7.69 16 21 C 0.06 0.57 11.25 127.77 1.44 2.01 16 22 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 2.33 7.59 -2.39 -0.02 2.31 16 24 H 0.03 1.34 7.31 -2.39 -0.02 1.32 16 25 H 0.03 1.27 6.35 -2.39 -0.02 1.25 16 26 H 0.04 1.52 7.33 -2.38 -0.02 1.50 16 27 H 0.26 15.29 6.03 -92.71 -0.56 14.73 16 28 H 0.34 11.88 8.30 -89.69 -0.74 11.14 16 29 H 0.07 1.93 7.30 -2.39 -0.02 1.91 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.13 1.88 7.16 -2.39 -0.02 1.87 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.14 0.57 7.14 -2.39 -0.02 0.55 16 Total: -1.00 -69.21 291.91 3.79 -65.42 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.56 Total: 9.25 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.66 Total: -18.86 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.49 Total: -105.84 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.05 Total: 50.02 kcal Total: -69.21 3.79 -65.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878698089.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.559 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds