Wall clock time and date at job start Sun Mar 29 2020 22:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46893 * 109.47225 * 120.00695 * 2 1 3 13 13 C 1.46899 * 111.00012 * 274.99984 * 12 2 1 14 14 C 1.52999 * 109.47155 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.38223 * 304.06777 * 14 13 12 16 16 C 1.54730 * 110.42748 * 181.54316 * 14 13 12 17 17 C 1.53890 * 101.88929 * 214.85981 * 16 14 13 18 18 C 1.52314 * 121.22566 * 159.08745 * 17 16 14 19 19 C 1.52331 * 121.20658 * 231.08534 * 17 16 14 20 20 C 1.50706 * 105.54958 * 15.05224 * 17 16 14 21 21 O 1.20820 * 125.26523 * 182.34641 * 20 17 16 22 22 O 1.34301 * 109.47769 * 2.36218 * 20 17 16 23 23 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 24 24 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 25 25 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 27 27 H 1.00901 * 111.00231 * 151.04180 * 12 2 1 28 28 H 1.08999 * 109.46890 * 299.99132 * 13 12 2 29 29 H 1.08995 * 109.47349 * 59.99863 * 13 12 2 30 30 H 1.08998 * 110.94785 * 333.00950 * 16 14 13 31 31 H 1.09000 * 110.94409 * 96.71854 * 16 14 13 32 32 H 1.09001 * 117.51328 * 218.05415 * 18 17 16 33 33 H 1.08996 * 117.51902 * 3.17759 * 18 17 16 34 34 H 1.09005 * 117.51519 * 356.79060 * 19 17 16 35 35 H 1.08997 * 117.51581 * 141.86167 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2223 2.3468 14 6 2.5951 -0.5336 3.5743 15 1 1.9690 -1.4034 3.7733 16 6 2.6334 0.4009 4.8069 17 6 3.8781 -0.1101 5.5537 18 6 4.6053 0.7642 6.5671 19 6 3.8202 -0.4649 7.0340 20 6 4.6231 -0.9640 4.5602 21 8 5.6392 -1.5759 4.7899 22 8 3.9831 -0.9392 3.3797 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9030 -0.5275 -4.4376 27 1 2.9173 -1.1207 1.0285 28 1 2.7590 1.0459 2.1183 29 1 1.0872 0.6160 2.5525 30 1 2.7600 1.4403 4.5042 31 1 1.7371 0.2802 5.4154 32 1 5.6935 0.7063 6.5930 33 1 4.1809 1.7446 6.7827 34 1 2.8792 -0.2928 7.5566 35 1 4.3913 -1.3316 7.3668 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878819722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:25 Heat of formation + Delta-G solvation = -50.650846 kcal Electronic energy + Delta-G solvation = -17061.109699 eV Core-core repulsion = 14253.284872 eV Total energy + Delta-G solvation = -2807.824827 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.20517 -37.73871 -36.92941 -36.03071 -32.83170 -31.36316 -29.37775 -26.38308 -25.07620 -23.44734 -22.94867 -21.77195 -20.05307 -19.71317 -17.19171 -16.88615 -16.69262 -15.76398 -15.58174 -15.17031 -14.56184 -13.92393 -13.65030 -13.47591 -13.01105 -12.97378 -12.64679 -12.29096 -12.10515 -11.94067 -11.82101 -11.29061 -10.99428 -10.87147 -10.66544 -10.52113 -10.28800 -10.14663 -10.09372 -9.51058 -9.05454 -8.62597 -7.61252 -6.10481 -4.10779 1.89695 3.15149 3.24760 3.33284 3.36738 3.44774 3.69769 4.08456 4.23722 4.36615 4.43327 4.70855 4.90569 5.07349 5.20804 5.21741 5.28424 5.33065 5.46758 5.50044 5.64721 5.71406 5.82608 6.03405 6.32374 6.47748 6.64982 6.74373 6.83386 7.33857 7.46402 7.53956 7.85512 8.28495 8.58263 8.94886 9.50780 11.02601 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045401 B = 0.005079 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.580900 B = 5511.609499 C = 5849.476485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.181 3.819 3 H 0.002 0.998 4 C -0.521 4.521 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.679 5.679 13 C 0.060 3.940 14 C 0.089 3.911 15 H 0.105 0.895 16 C -0.114 4.114 17 C -0.220 4.220 18 C -0.133 4.133 19 C -0.134 4.134 20 C 0.516 3.484 21 O -0.460 6.460 22 O -0.330 6.330 23 H 0.025 0.975 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.265 0.735 27 H 0.349 0.651 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 5.289 20.304 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.073 3.927 3 H 0.019 0.981 4 C -0.559 4.559 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.311 5.311 13 C -0.071 4.071 14 C 0.034 3.966 15 H 0.123 0.877 16 C -0.152 4.152 17 C -0.222 4.222 18 C -0.170 4.170 19 C -0.170 4.170 20 C 0.356 3.644 21 O -0.344 6.344 22 O -0.246 6.246 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.168 0.832 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.990 4.689 20.132 20.695 hybrid contribution 0.027 1.376 -0.504 1.466 sum -0.963 6.065 19.628 20.567 Atomic orbital electron populations 1.22082 0.98626 1.01119 0.97721 1.19544 0.91753 0.93021 0.88428 0.98072 1.21100 1.32388 1.13883 0.88545 0.90246 1.24938 0.95714 0.96718 0.95731 1.69893 1.45453 1.40212 0.97937 0.86792 0.80650 0.83533 0.76770 1.20471 1.22504 1.19458 1.60567 1.33726 1.31787 1.05020 1.22121 1.00146 0.94281 0.90511 1.23970 0.78634 0.98163 0.95832 0.87724 1.22501 0.96322 1.00667 0.95700 1.22331 1.00975 1.05848 0.93077 1.22877 0.99964 0.95622 0.98505 1.22932 1.02906 1.00032 0.91176 1.21837 0.83046 0.77817 0.81728 1.90673 1.23115 1.42035 1.78603 1.87178 1.25573 1.80773 1.31104 0.95623 0.94409 0.92224 0.92544 0.83239 0.94684 0.89411 0.88857 0.88450 0.87647 0.87295 0.87323 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.90 37.16 0.33 -2.64 16 2 C 0.18 4.24 2.19 -68.86 -0.15 4.09 16 3 H 0.00 0.04 6.86 -51.93 -0.36 -0.31 16 4 C -0.52 -14.65 9.17 -34.44 -0.32 -14.97 16 5 H 0.08 2.43 7.86 -52.49 -0.41 2.02 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 8 Si 0.89 21.87 24.37 -169.99 -4.14 17.73 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 12 N -0.68 -13.62 6.30 -107.96 -0.68 -14.30 16 13 C 0.06 0.91 5.16 -3.83 -0.02 0.89 16 14 C 0.09 1.14 3.78 -25.82 -0.10 1.05 16 15 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.11 -1.05 6.48 -25.36 -0.16 -1.21 16 17 C -0.22 -2.28 2.44 -155.89 -0.38 -2.66 16 18 C -0.13 -1.07 10.28 -27.01 -0.28 -1.34 16 19 C -0.13 -1.04 10.27 -27.00 -0.28 -1.32 16 20 C 0.52 7.73 8.34 36.01 0.30 8.03 16 21 O -0.46 -8.19 18.00 -18.38 -0.33 -8.52 16 22 O -0.33 -5.33 10.40 -39.08 -0.41 -5.73 16 23 H 0.02 0.46 7.45 -51.93 -0.39 0.07 16 24 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.35 7.44 7.89 -39.29 -0.31 7.13 16 28 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 29 H 0.09 1.20 7.44 -51.93 -0.39 0.81 16 30 H 0.09 0.79 7.93 -51.93 -0.41 0.38 16 31 H 0.10 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -32.33 288.05 -6.59 -38.91 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.99 Total: 2.40 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.15 Total: -8.13 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.09 Total: -41.00 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.74 Total: -14.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.33 -6.59 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.737 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds