Wall clock time and date at job start Sun Mar 29 2020 22:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46893 * 109.47225 * 120.00695 * 2 1 3 13 13 C 1.46899 * 111.00012 * 274.99984 * 12 2 1 14 14 C 1.52999 * 109.47155 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.38223 * 304.06777 * 14 13 12 16 16 C 1.54730 * 110.42748 * 181.54316 * 14 13 12 17 17 C 1.53890 * 101.88929 * 214.85981 * 16 14 13 18 18 C 1.52314 * 121.22566 * 159.08745 * 17 16 14 19 19 C 1.52331 * 121.20658 * 231.08534 * 17 16 14 20 20 C 1.50706 * 105.54958 * 15.05224 * 17 16 14 21 21 O 1.20820 * 125.26523 * 182.34641 * 20 17 16 22 22 O 1.34301 * 109.47769 * 2.36218 * 20 17 16 23 23 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 24 24 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 25 25 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 26 26 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 27 27 H 1.00901 * 111.00231 * 151.04180 * 12 2 1 28 28 H 1.08999 * 109.46890 * 299.99132 * 13 12 2 29 29 H 1.08995 * 109.47349 * 59.99863 * 13 12 2 30 30 H 1.08998 * 110.94785 * 333.00950 * 16 14 13 31 31 H 1.09000 * 110.94409 * 96.71854 * 16 14 13 32 32 H 1.09001 * 117.51328 * 218.05415 * 18 17 16 33 33 H 1.08996 * 117.51902 * 3.17759 * 18 17 16 34 34 H 1.09005 * 117.51519 * 356.79060 * 19 17 16 35 35 H 1.08997 * 117.51581 * 141.86167 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2223 2.3468 14 6 2.5951 -0.5336 3.5743 15 1 1.9690 -1.4034 3.7733 16 6 2.6334 0.4009 4.8069 17 6 3.8781 -0.1101 5.5537 18 6 4.6053 0.7642 6.5671 19 6 3.8202 -0.4649 7.0340 20 6 4.6231 -0.9640 4.5602 21 8 5.6392 -1.5759 4.7899 22 8 3.9831 -0.9392 3.3797 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.9030 -0.5275 -4.4376 27 1 2.9173 -1.1207 1.0285 28 1 2.7590 1.0459 2.1183 29 1 1.0872 0.6160 2.5525 30 1 2.7600 1.4403 4.5042 31 1 1.7371 0.2802 5.4154 32 1 5.6935 0.7063 6.5930 33 1 4.1809 1.7446 6.7827 34 1 2.8792 -0.2928 7.5566 35 1 4.3913 -1.3316 7.3668 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878819722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:25 Heat of formation + Delta-G solvation = -74.120471 kcal Electronic energy + Delta-G solvation = -17062.127419 eV Core-core repulsion = 14253.284872 eV Total energy + Delta-G solvation = -2808.842546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.22389 -38.97020 -37.79028 -37.60228 -34.69465 -32.85824 -30.71509 -27.63450 -26.99104 -24.63673 -23.54023 -22.78819 -21.78886 -20.79341 -18.93743 -18.09242 -17.87890 -17.29545 -16.79046 -16.21416 -15.80734 -15.59924 -15.06032 -14.79646 -14.38805 -13.99718 -13.93091 -13.73862 -13.56232 -13.11516 -12.76635 -12.70751 -12.45549 -12.38523 -12.05049 -11.71589 -11.59003 -11.37833 -11.20256 -11.05571 -11.02697 -10.77824 -9.21880 -8.32023 -6.38036 0.83833 1.31312 1.36213 1.47372 2.13270 2.30974 2.71238 2.85743 3.03093 3.19254 3.41473 3.60415 3.84538 4.05789 4.07790 4.20670 4.48067 4.61523 4.68724 4.69311 4.71392 4.75124 4.88933 4.92203 4.93676 4.97339 5.05731 5.16842 5.49233 5.64640 5.77548 5.96344 6.34373 6.43408 6.61449 6.76667 7.28522 8.85065 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.045401 B = 0.005079 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.580900 B = 5511.609499 C = 5849.476485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.184 3.816 3 H 0.000 1.000 4 C -0.531 4.531 5 H 0.031 0.969 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.960 3.040 9 H -0.262 1.262 10 H -0.300 1.300 11 H -0.245 1.245 12 N -0.685 5.685 13 C 0.059 3.941 14 C 0.086 3.914 15 H 0.110 0.890 16 C -0.096 4.096 17 C -0.234 4.234 18 C -0.123 4.123 19 C -0.117 4.117 20 C 0.504 3.496 21 O -0.507 6.507 22 O -0.367 6.367 23 H 0.067 0.933 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.267 0.733 27 H 0.334 0.666 28 H 0.030 0.970 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 7.938 23.115 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.075 3.925 3 H 0.018 0.982 4 C -0.569 4.569 5 H 0.050 0.950 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.787 3.213 9 H -0.188 1.188 10 H -0.228 1.228 11 H -0.169 1.169 12 N -0.315 5.315 13 C -0.071 4.071 14 C 0.032 3.968 15 H 0.128 0.872 16 C -0.133 4.133 17 C -0.236 4.236 18 C -0.160 4.160 19 C -0.154 4.154 20 C 0.348 3.652 21 O -0.394 6.394 22 O -0.284 6.284 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.048 0.952 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.153 0.847 32 H 0.111 0.889 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.501 7.347 22.983 24.382 hybrid contribution 0.915 0.442 -1.366 1.702 sum -2.586 7.789 21.618 23.123 Atomic orbital electron populations 1.21975 0.96501 1.01191 0.99428 1.19416 0.93307 0.92153 0.87633 0.98243 1.21448 1.31597 1.12698 0.91183 0.95027 1.25915 0.97330 1.00406 0.95127 1.70063 1.47589 1.42612 0.98698 0.85684 0.79053 0.79289 0.77307 1.18752 1.22770 1.16900 1.60554 1.32861 1.32850 1.05255 1.22305 1.01818 0.93503 0.89430 1.24103 0.77049 0.99231 0.96433 0.87195 1.22528 0.97073 1.00004 0.93688 1.22294 1.01350 1.06633 0.93349 1.23064 0.99523 0.97094 0.96340 1.23130 1.04150 0.99440 0.88692 1.22680 0.82576 0.77588 0.82406 1.90626 1.25176 1.44177 1.79460 1.87125 1.27366 1.81131 1.32816 0.91375 0.95038 0.93106 0.92424 0.84920 0.95155 0.86525 0.87663 0.84728 0.88929 0.84205 0.83859 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.90 71.98 0.64 -4.72 16 2 C 0.18 8.44 2.19 44.17 0.10 8.54 16 3 H 0.00 0.00 6.86 -2.39 -0.02 -0.01 16 4 C -0.53 -30.78 9.17 25.60 0.23 -30.55 16 5 H 0.03 2.06 7.86 -2.92 -0.02 2.04 16 6 C 0.01 0.56 5.45 84.65 0.46 1.03 16 7 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 8 Si 0.96 44.49 24.37 68.60 1.67 46.16 16 9 H -0.26 -11.40 6.87 99.48 0.68 -10.72 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 11 H -0.25 -10.33 6.53 99.48 0.65 -9.68 16 12 N -0.68 -27.18 6.30 -495.47 -3.12 -30.31 16 13 C 0.06 1.65 5.16 86.30 0.45 2.10 16 14 C 0.09 2.04 3.78 31.18 0.12 2.16 16 15 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.10 -1.35 6.48 31.48 0.20 -1.14 16 17 C -0.23 -4.24 2.44 -53.07 -0.13 -4.37 16 18 C -0.12 -1.58 10.28 30.41 0.31 -1.27 16 19 C -0.12 -1.41 10.27 30.42 0.31 -1.10 16 20 C 0.50 15.27 8.34 71.24 0.59 15.86 16 21 O -0.51 -18.91 18.00 21.63 0.39 -18.52 16 22 O -0.37 -12.06 10.40 -52.45 -0.55 -12.60 16 23 H 0.07 2.15 7.45 -2.39 -0.02 2.13 16 24 H 0.03 1.30 3.27 -2.39 -0.01 1.29 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 26 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 27 H 0.33 14.85 7.89 -89.69 -0.71 14.14 16 28 H 0.03 0.90 8.06 -2.39 -0.02 0.88 16 29 H 0.12 2.62 7.44 -2.39 -0.02 2.61 16 30 H 0.10 1.27 7.93 -2.39 -0.02 1.25 16 31 H 0.13 0.95 8.13 -2.39 -0.02 0.93 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.14 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.28 288.05 2.29 -72.99 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.31 Total: 15.68 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 3.29 Total: -13.47 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -2.82 Total: -90.24 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.16 Total: -31.12 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.67 Total: 46.16 kcal Total: -75.28 2.29 -72.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.127 kcal (2) G-P(sol) polarization free energy of solvation -75.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds