Wall clock time and date at job start Sun Mar 29 2020 22:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46929 * 2 1 4 4 C 1.50694 * 109.47284 * 120.00439 * 2 1 3 5 5 H 1.07999 * 120.00444 * 120.00019 * 4 2 1 6 6 C 1.37884 * 119.99604 * 299.99753 * 4 2 1 7 7 N 1.31506 * 120.00062 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99901 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47058 * 89.99752 * 8 6 4 10 10 H 1.48497 * 109.47293 * 210.00049 * 8 6 4 11 11 H 1.48505 * 109.46818 * 330.00007 * 8 6 4 12 12 N 1.46907 * 109.47066 * 240.00429 * 2 1 3 13 13 C 1.46891 * 111.00040 * 84.99603 * 12 2 1 14 14 C 1.53007 * 109.46831 * 179.97438 * 13 12 2 15 15 H 1.08999 * 110.38131 * 304.06362 * 14 13 12 16 16 C 1.54737 * 110.42645 * 181.54692 * 14 13 12 17 17 C 1.53884 * 101.88970 * 214.87213 * 16 14 13 18 18 C 1.52332 * 121.20048 * 231.08225 * 17 16 14 19 19 C 1.52468 * 121.21638 * 159.13027 * 17 16 14 20 20 C 1.50694 * 105.54950 * 15.04347 * 17 16 14 21 21 O 1.20831 * 125.25969 * 182.33727 * 20 17 16 22 22 O 1.34302 * 109.48299 * 2.37053 * 20 17 16 23 23 H 1.08994 * 109.47107 * 299.99636 * 1 2 3 24 24 H 1.09000 * 109.47523 * 60.00199 * 1 2 3 25 25 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 26 26 H 0.97002 * 120.00249 * 179.97438 * 7 6 4 27 27 H 1.00904 * 110.99541 * 321.04212 * 12 2 1 28 28 H 1.08997 * 109.47483 * 60.00291 * 13 12 2 29 29 H 1.08994 * 109.47657 * 299.99700 * 13 12 2 30 30 H 1.08997 * 110.94458 * 96.72021 * 16 14 13 31 31 H 1.09010 * 110.94464 * 333.01950 * 16 14 13 32 32 H 1.09002 * 117.51665 * 141.91163 * 18 17 16 33 33 H 1.09002 * 117.51464 * 356.83242 * 18 17 16 34 34 H 1.08997 * 117.50838 * 3.16880 * 19 17 16 35 35 H 1.09003 * 117.57451 * 217.99952 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5441 4.4117 10 1 1.3445 -0.9491 5.1122 11 1 2.4880 -2.5654 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5962 -0.5328 -3.5742 15 1 3.5605 -0.9936 -3.3602 16 6 2.7078 0.4208 -4.7877 17 6 2.3303 -0.5071 -5.9559 18 6 3.2139 -0.6195 -7.1916 19 6 1.8427 0.0558 -7.2863 20 6 1.6931 -1.7164 -5.3215 21 8 1.2992 -2.6908 -5.9178 22 8 1.6302 -1.5436 -3.9912 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1608 3.4844 27 1 1.4495 -1.4979 -1.4101 28 1 2.7587 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5526 30 1 3.7264 0.7924 -4.8988 31 1 2.0007 1.2459 -4.7012 32 1 3.3224 -1.6048 -7.6452 33 1 4.0949 0.0205 -7.2407 34 1 1.8219 1.1400 -7.3969 35 1 1.0495 -0.4850 -7.8027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878819724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:29 Heat of formation + Delta-G solvation = -58.569362 kcal Electronic energy + Delta-G solvation = -17010.028314 eV Core-core repulsion = 14201.860115 eV Total energy + Delta-G solvation = -2808.168200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.15997 -37.68823 -36.88621 -35.85913 -32.84164 -31.12621 -28.66474 -25.94128 -25.11335 -23.36944 -22.91278 -21.71167 -20.26570 -19.69950 -17.11051 -16.79629 -16.39895 -15.59293 -15.39340 -14.78512 -14.67872 -13.80890 -13.56358 -13.31846 -12.96622 -12.72028 -12.57116 -11.94114 -11.87590 -11.56954 -11.52469 -11.00251 -10.87752 -10.80947 -10.63025 -10.44260 -10.25135 -10.13746 -10.10477 -9.82710 -9.01945 -8.36390 -7.31171 -5.98879 -4.02070 1.91988 3.19681 3.33517 3.39664 3.44483 3.48520 3.74160 4.14304 4.29596 4.44013 4.48723 4.80714 4.98207 5.14145 5.24911 5.32953 5.37308 5.47571 5.52552 5.56263 5.73269 5.78274 6.01007 6.15955 6.68402 6.84911 6.87597 7.08250 7.31720 7.48810 7.74061 7.86954 8.24555 8.49661 8.58497 9.05078 9.63343 11.08251 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.051082 B = 0.004602 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.005036 B = 6083.347893 C = 6177.414037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.063 3.937 14 C 0.089 3.911 15 H 0.104 0.896 16 C -0.114 4.114 17 C -0.220 4.220 18 C -0.134 4.134 19 C -0.133 4.133 20 C 0.516 3.484 21 O -0.463 6.463 22 O -0.332 6.332 23 H 0.089 0.911 24 H 0.005 0.995 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.334 0.666 28 H 0.089 0.911 29 H 0.032 0.968 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 2.065 -16.971 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.068 4.068 14 C 0.034 3.966 15 H 0.122 0.878 16 C -0.152 4.152 17 C -0.222 4.222 18 C -0.171 4.171 19 C -0.170 4.170 20 C 0.356 3.644 21 O -0.347 6.347 22 O -0.248 6.248 23 H 0.108 0.892 24 H 0.024 0.976 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.168 1.696 -16.750 17.344 hybrid contribution -0.682 -0.174 0.701 0.994 sum 3.486 1.522 -16.050 16.494 Atomic orbital electron populations 1.22429 1.00586 0.99394 1.00446 1.19189 0.89736 0.94345 0.86393 0.94841 1.21153 1.30235 1.12481 0.89548 0.91878 1.24950 0.95294 0.95219 0.99064 1.69879 1.37263 1.23292 1.23363 0.86494 0.78404 0.80080 0.82383 1.20768 1.21418 1.19897 1.60866 1.58491 1.09101 1.03001 1.22067 0.99701 0.95624 0.89358 1.24037 0.91596 0.86453 0.94544 0.87771 1.22508 1.03972 0.97494 0.91220 1.22353 1.08489 0.99067 0.92300 1.22931 0.94598 1.03346 0.96178 1.22899 0.98292 1.01151 0.94650 1.21850 0.74990 0.85596 0.81955 1.90668 1.46073 1.32543 1.65449 1.87158 1.56328 1.57990 1.23315 0.89222 0.97644 0.95213 0.93067 0.84890 0.89331 0.95013 0.88440 0.88846 0.87645 0.87308 0.87283 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.24 2.57 -68.86 -0.18 5.06 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.49 16 4 C -0.50 -13.68 8.84 -34.44 -0.30 -13.99 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.68 -14.35 6.23 -107.96 -0.67 -15.03 16 13 C 0.06 1.03 5.16 -3.83 -0.02 1.01 16 14 C 0.09 1.20 3.78 -25.81 -0.10 1.11 16 15 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 16 C -0.11 -1.13 6.48 -25.36 -0.16 -1.29 16 17 C -0.22 -2.36 2.45 -155.82 -0.38 -2.74 16 18 C -0.13 -1.09 10.27 -27.00 -0.28 -1.37 16 19 C -0.13 -1.11 10.29 -26.93 -0.28 -1.39 16 20 C 0.52 7.83 8.34 36.00 0.30 8.13 16 21 O -0.46 -8.25 18.00 -18.39 -0.33 -8.58 16 22 O -0.33 -5.43 10.40 -39.09 -0.41 -5.83 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.33 7.09 8.13 -39.29 -0.32 6.77 16 28 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 29 H 0.03 0.54 7.44 -51.93 -0.39 0.15 16 30 H 0.10 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.09 0.86 7.93 -51.92 -0.41 0.45 16 32 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 295.20 15.07 4.45 4.45 Total: -1.00 -30.75 295.20 -7.66 -38.41 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.15 Total: 2.86 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.16 Total: -7.80 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.05 Total: -39.97 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.74 Total: -14.42 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.75 -7.66 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.162 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds