Wall clock time and date at job start Sun Mar 29 2020 22:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46929 * 2 1 4 4 C 1.50694 * 109.47284 * 120.00439 * 2 1 3 5 5 H 1.07999 * 120.00444 * 120.00019 * 4 2 1 6 6 C 1.37884 * 119.99604 * 299.99753 * 4 2 1 7 7 N 1.31506 * 120.00062 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99901 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47058 * 89.99752 * 8 6 4 10 10 H 1.48497 * 109.47293 * 210.00049 * 8 6 4 11 11 H 1.48505 * 109.46818 * 330.00007 * 8 6 4 12 12 N 1.46907 * 109.47066 * 240.00429 * 2 1 3 13 13 C 1.46891 * 111.00040 * 84.99603 * 12 2 1 14 14 C 1.53007 * 109.46831 * 179.97438 * 13 12 2 15 15 H 1.08999 * 110.38131 * 304.06362 * 14 13 12 16 16 C 1.54737 * 110.42645 * 181.54692 * 14 13 12 17 17 C 1.53884 * 101.88970 * 214.87213 * 16 14 13 18 18 C 1.52332 * 121.20048 * 231.08225 * 17 16 14 19 19 C 1.52468 * 121.21638 * 159.13027 * 17 16 14 20 20 C 1.50694 * 105.54950 * 15.04347 * 17 16 14 21 21 O 1.20831 * 125.25969 * 182.33727 * 20 17 16 22 22 O 1.34302 * 109.48299 * 2.37053 * 20 17 16 23 23 H 1.08994 * 109.47107 * 299.99636 * 1 2 3 24 24 H 1.09000 * 109.47523 * 60.00199 * 1 2 3 25 25 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 26 26 H 0.97002 * 120.00249 * 179.97438 * 7 6 4 27 27 H 1.00904 * 110.99541 * 321.04212 * 12 2 1 28 28 H 1.08997 * 109.47483 * 60.00291 * 13 12 2 29 29 H 1.08994 * 109.47657 * 299.99700 * 13 12 2 30 30 H 1.08997 * 110.94458 * 96.72021 * 16 14 13 31 31 H 1.09010 * 110.94464 * 333.01950 * 16 14 13 32 32 H 1.09002 * 117.51665 * 141.91163 * 18 17 16 33 33 H 1.09002 * 117.51464 * 356.83242 * 18 17 16 34 34 H 1.08997 * 117.50838 * 3.16880 * 19 17 16 35 35 H 1.09003 * 117.57451 * 217.99952 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5441 4.4117 10 1 1.3445 -0.9491 5.1122 11 1 2.4880 -2.5654 3.7120 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5962 -0.5328 -3.5742 15 1 3.5605 -0.9936 -3.3602 16 6 2.7078 0.4208 -4.7877 17 6 2.3303 -0.5071 -5.9559 18 6 3.2139 -0.6195 -7.1916 19 6 1.8427 0.0558 -7.2863 20 6 1.6931 -1.7164 -5.3215 21 8 1.2992 -2.6908 -5.9178 22 8 1.6302 -1.5436 -3.9912 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1608 3.4844 27 1 1.4495 -1.4979 -1.4101 28 1 2.7587 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5526 30 1 3.7264 0.7924 -4.8988 31 1 2.0007 1.2459 -4.7012 32 1 3.3224 -1.6048 -7.6452 33 1 4.0949 0.0205 -7.2407 34 1 1.8219 1.1400 -7.3969 35 1 1.0495 -0.4850 -7.8027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878819724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:28 Heat of formation + Delta-G solvation = -78.354617 kcal Electronic energy + Delta-G solvation = -17010.886267 eV Core-core repulsion = 14201.860115 eV Total energy + Delta-G solvation = -2809.026153 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.21658 -38.94935 -37.75831 -37.53885 -34.67976 -32.52457 -30.14802 -27.35855 -27.09897 -24.58793 -23.53589 -22.79527 -22.15086 -20.77680 -18.49764 -18.06780 -17.86945 -16.92422 -16.65269 -16.27733 -16.02765 -15.20995 -14.99791 -14.63365 -14.15705 -13.96180 -13.73417 -13.56349 -13.18524 -13.03147 -12.82720 -12.62237 -12.44425 -12.33903 -12.15905 -11.95815 -11.71337 -11.48514 -11.20604 -11.05694 -10.99936 -10.47932 -9.02740 -8.09585 -6.20312 0.84021 1.43993 1.44871 1.55635 2.12656 2.44758 2.72022 2.86006 3.19007 3.23898 3.42352 3.66802 3.87200 4.07045 4.09082 4.24686 4.60846 4.63236 4.68924 4.69738 4.78355 4.86763 4.91255 4.93304 4.98713 5.09687 5.16920 5.39211 5.68755 5.77315 5.80051 6.25891 6.34912 6.60940 6.75588 6.92763 7.49466 8.96007 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.051082 B = 0.004602 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.005036 B = 6083.347893 C = 6177.414037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.013 0.987 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.690 5.690 13 C 0.063 3.937 14 C 0.090 3.910 15 H 0.108 0.892 16 C -0.098 4.098 17 C -0.235 4.235 18 C -0.118 4.118 19 C -0.123 4.123 20 C 0.506 3.494 21 O -0.504 6.504 22 O -0.364 6.364 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.101 0.899 29 H 0.029 0.971 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 3.099 -18.124 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.031 0.969 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.319 5.319 13 C -0.066 4.066 14 C 0.035 3.965 15 H 0.126 0.874 16 C -0.135 4.135 17 C -0.237 4.237 18 C -0.154 4.154 19 C -0.159 4.159 20 C 0.349 3.651 21 O -0.392 6.392 22 O -0.280 6.280 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.119 0.881 29 H 0.047 0.953 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.451 2.744 -17.917 18.928 hybrid contribution -1.101 -0.507 1.025 1.588 sum 4.349 2.237 -16.892 17.586 Atomic orbital electron populations 1.22254 1.00361 0.98925 1.00117 1.18961 0.89795 0.93146 0.87411 0.96863 1.21453 1.30489 1.12499 0.91137 0.92879 1.25689 0.95416 0.95879 1.01809 1.69991 1.37900 1.24266 1.24021 0.85530 0.78062 0.78941 0.78895 1.20011 1.20968 1.19722 1.60738 1.57916 1.09621 1.03641 1.22160 1.00068 0.95508 0.88885 1.24055 0.90698 0.86824 0.94903 0.87412 1.22517 1.06284 0.96377 0.88319 1.22298 1.10594 0.97261 0.93507 1.23128 0.95574 1.03587 0.93131 1.23088 0.98252 1.02708 0.91878 1.22604 0.74284 0.86443 0.81719 1.90627 1.48044 1.34550 1.65995 1.87100 1.57183 1.59061 1.24703 0.91736 0.95638 0.95640 0.92960 0.85312 0.88125 0.95316 0.85092 0.87891 0.88498 0.84089 0.84400 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.70 8.94 71.98 0.64 -7.05 16 2 C 0.22 10.82 2.57 44.17 0.11 10.93 16 3 H 0.01 0.72 7.80 -2.39 -0.02 0.70 16 4 C -0.52 -28.85 8.84 25.60 0.23 -28.63 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -52.82 11.32 21.45 0.24 -52.57 16 8 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.69 -28.99 6.23 -495.47 -3.09 -32.07 16 13 C 0.06 2.02 5.16 86.31 0.45 2.46 16 14 C 0.09 2.30 3.78 31.19 0.12 2.42 16 15 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 16 C -0.10 -1.59 6.48 31.48 0.20 -1.39 16 17 C -0.23 -4.46 2.45 -53.03 -0.13 -4.59 16 18 C -0.12 -1.51 10.27 30.42 0.31 -1.20 16 19 C -0.12 -1.65 10.29 30.47 0.31 -1.34 16 20 C 0.51 15.29 8.34 71.23 0.59 15.89 16 21 O -0.50 -18.46 18.00 21.60 0.39 -18.07 16 22 O -0.36 -11.92 10.40 -52.47 -0.55 -12.46 16 23 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 24 H 0.02 1.09 7.45 -2.39 -0.02 1.08 16 25 H 0.02 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.33 14.22 8.13 -89.69 -0.73 13.49 16 28 H 0.10 2.96 8.06 -2.39 -0.02 2.94 16 29 H 0.03 0.94 7.44 -2.39 -0.02 0.92 16 30 H 0.13 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.10 1.51 7.93 -2.38 -0.02 1.50 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.14 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.86 295.20 2.67 -65.19 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.36 Total: 15.37 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 3.29 Total: -11.48 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.84 Total: -84.65 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.16 Total: -30.54 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -67.86 2.67 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.165 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds