Wall clock time and date at job start Sun Mar 29 2020 22:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46568 * 2 1 4 4 C 1.50696 * 109.47174 * 240.00491 * 2 1 3 5 5 H 1.08007 * 119.99738 * 239.99679 * 4 2 1 6 6 C 1.37875 * 120.00495 * 59.99227 * 4 2 1 7 7 N 1.31519 * 119.99634 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00303 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46938 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47199 * 120.00670 * 8 6 4 11 11 H 1.48500 * 109.47057 * 240.00661 * 8 6 4 12 12 N 1.46894 * 109.47335 * 120.00024 * 2 1 3 13 13 C 1.46896 * 111.00234 * 275.00314 * 12 2 1 14 14 C 1.53001 * 109.47550 * 179.97438 * 13 12 2 15 15 H 1.09002 * 110.38009 * 59.29858 * 14 13 12 16 16 C 1.54732 * 110.42838 * 181.68637 * 14 13 12 17 17 C 1.53889 * 101.88890 * 145.25432 * 16 14 13 18 18 C 1.52316 * 121.22601 * 200.92952 * 17 16 14 19 19 C 1.52332 * 121.20735 * 128.93089 * 17 16 14 20 20 C 1.50706 * 105.54890 * 344.95893 * 17 16 14 21 21 O 1.20825 * 125.26281 * 177.61853 * 20 17 16 22 22 O 1.34293 * 109.47824 * 357.62344 * 20 17 16 23 23 H 1.09001 * 109.47721 * 299.99946 * 1 2 3 24 24 H 1.09006 * 109.47652 * 60.00011 * 1 2 3 25 25 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99791 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99820 * 38.95364 * 12 2 1 28 28 H 1.09006 * 109.47280 * 59.99628 * 13 12 2 29 29 H 1.09001 * 109.47186 * 300.00434 * 13 12 2 30 30 H 1.08995 * 110.94833 * 263.40213 * 16 14 13 31 31 H 1.09000 * 110.94600 * 27.07482 * 16 14 13 32 32 H 1.09001 * 117.51708 * 356.82329 * 18 17 16 33 33 H 1.08994 * 117.51798 * 141.94462 * 18 17 16 34 34 H 1.08995 * 117.51887 * 218.09088 * 19 17 16 35 35 H 1.08998 * 117.51370 * 3.21128 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1455 -2.2875 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2225 2.3468 14 6 2.5950 -0.5332 3.5744 15 1 3.5857 -0.9445 3.3807 16 6 2.6299 0.4005 4.8078 17 6 2.2650 -0.5665 5.9479 18 6 1.7158 -0.0538 7.2729 19 6 3.1194 -0.6624 7.2054 20 6 1.7020 -1.7914 5.2741 21 8 1.3389 -2.7946 5.8411 22 8 1.6664 -1.5954 3.9461 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7092 1.1618 -3.4843 27 1 1.4495 -1.4979 1.4100 28 1 1.0870 0.6163 2.5525 29 1 2.7587 1.0462 2.1182 30 1 3.6267 0.8164 4.9537 31 1 1.8881 1.1940 4.7169 32 1 1.6406 1.0258 7.4029 33 1 0.9349 -0.6414 7.7555 34 1 3.2617 -1.6502 7.6436 35 1 3.9674 0.0170 7.2910 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878819725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:30 Heat of formation + Delta-G solvation = -58.469805 kcal Electronic energy + Delta-G solvation = -17019.343581 eV Core-core repulsion = 14211.179699 eV Total energy + Delta-G solvation = -2808.163883 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.16256 -37.68832 -36.89396 -35.85392 -32.83947 -31.13012 -28.66442 -25.93485 -25.11371 -23.37527 -22.91508 -21.71128 -20.27385 -19.67805 -17.12103 -16.79600 -16.39739 -15.59232 -15.39176 -14.78301 -14.68417 -13.82508 -13.55637 -13.29756 -12.96834 -12.71561 -12.57730 -11.94575 -11.87626 -11.56847 -11.52372 -11.01593 -10.86485 -10.81977 -10.62545 -10.41735 -10.25547 -10.14514 -10.10077 -9.82897 -9.00392 -8.36778 -7.30478 -5.98941 -4.02010 1.92289 3.19823 3.32376 3.40113 3.45920 3.48576 3.74043 4.14513 4.29626 4.44157 4.48645 4.80768 4.98134 5.13803 5.24879 5.32989 5.36866 5.47990 5.52700 5.56060 5.73298 5.78122 6.01382 6.15310 6.68236 6.84935 6.87558 7.08256 7.31861 7.49078 7.74054 7.87438 8.24689 8.50179 8.58718 9.05568 9.63510 11.08254 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050964 B = 0.004627 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.279084 B = 6049.783952 C = 6163.200560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.684 5.684 13 C 0.063 3.937 14 C 0.089 3.911 15 H 0.104 0.896 16 C -0.114 4.114 17 C -0.220 4.220 18 C -0.133 4.133 19 C -0.134 4.134 20 C 0.516 3.484 21 O -0.462 6.462 22 O -0.331 6.331 23 H 0.004 0.996 24 H 0.089 0.911 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.334 0.666 28 H 0.031 0.969 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 2.058 17.107 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.314 5.314 13 C -0.067 4.067 14 C 0.034 3.966 15 H 0.121 0.879 16 C -0.152 4.152 17 C -0.222 4.222 18 C -0.170 4.170 19 C -0.171 4.171 20 C 0.356 3.644 21 O -0.347 6.347 22 O -0.247 6.247 23 H 0.023 0.977 24 H 0.108 0.892 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.929 1.671 16.870 17.402 hybrid contribution -0.704 -0.164 -0.701 1.007 sum 3.224 1.507 16.169 16.556 Atomic orbital electron populations 1.22431 1.00595 0.99389 1.00441 1.19195 0.89728 0.94356 0.86427 0.94831 1.21195 1.30140 1.12442 0.89536 0.91819 1.24953 0.95321 0.95214 0.99077 1.69895 1.37408 1.23259 1.23251 0.86442 0.78517 0.79666 0.82789 1.19703 1.21204 1.21149 1.60851 1.58516 1.09093 1.02965 1.22071 0.99657 0.95608 0.89395 1.24020 0.92574 0.85165 0.94827 0.87852 1.22514 1.04052 0.97226 0.91440 1.22333 1.09131 0.98586 0.92144 1.22874 0.97637 1.01721 0.94770 1.22929 0.94689 1.03576 0.95871 1.21850 0.74342 0.86206 0.82003 1.90666 1.45561 1.31153 1.67333 1.87152 1.58728 1.55009 1.23812 0.97653 0.89223 0.95217 0.93132 0.84842 0.95080 0.89335 0.88456 0.88850 0.87286 0.87705 0.87639 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.23 2.57 -68.87 -0.18 5.06 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -13.67 8.84 -34.44 -0.30 -13.98 16 5 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.68 -14.38 6.23 -107.96 -0.67 -15.05 16 13 C 0.06 1.03 5.18 -3.83 -0.02 1.01 16 14 C 0.09 1.21 3.80 -25.82 -0.10 1.11 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 16 C -0.11 -1.13 6.48 -25.36 -0.16 -1.29 16 17 C -0.22 -2.36 2.44 -155.89 -0.38 -2.74 16 18 C -0.13 -1.11 10.28 -27.01 -0.28 -1.39 16 19 C -0.13 -1.09 10.27 -27.00 -0.28 -1.37 16 20 C 0.52 7.84 8.34 36.01 0.30 8.14 16 21 O -0.46 -8.26 18.00 -18.38 -0.33 -8.59 16 22 O -0.33 -5.42 10.29 -39.06 -0.40 -5.83 16 23 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.33 7.12 8.02 -39.29 -0.32 6.81 16 28 H 0.03 0.52 7.44 -51.93 -0.39 0.14 16 29 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 30 H 0.10 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -30.82 295.01 -7.66 -38.47 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.14 Total: 2.82 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.16 Total: -7.80 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.05 Total: -40.01 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.73 Total: -14.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.82 -7.66 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.996 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds