Wall clock time and date at job start Sun Mar 29 2020 22:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46568 * 2 1 4 4 C 1.50696 * 109.47174 * 240.00491 * 2 1 3 5 5 H 1.08007 * 119.99738 * 239.99679 * 4 2 1 6 6 C 1.37875 * 120.00495 * 59.99227 * 4 2 1 7 7 N 1.31519 * 119.99634 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00303 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46938 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47199 * 120.00670 * 8 6 4 11 11 H 1.48500 * 109.47057 * 240.00661 * 8 6 4 12 12 N 1.46894 * 109.47335 * 120.00024 * 2 1 3 13 13 C 1.46896 * 111.00234 * 275.00314 * 12 2 1 14 14 C 1.53001 * 109.47550 * 179.97438 * 13 12 2 15 15 H 1.09002 * 110.38009 * 59.29858 * 14 13 12 16 16 C 1.54732 * 110.42838 * 181.68637 * 14 13 12 17 17 C 1.53889 * 101.88890 * 145.25432 * 16 14 13 18 18 C 1.52316 * 121.22601 * 200.92952 * 17 16 14 19 19 C 1.52332 * 121.20735 * 128.93089 * 17 16 14 20 20 C 1.50706 * 105.54890 * 344.95893 * 17 16 14 21 21 O 1.20825 * 125.26281 * 177.61853 * 20 17 16 22 22 O 1.34293 * 109.47824 * 357.62344 * 20 17 16 23 23 H 1.09001 * 109.47721 * 299.99946 * 1 2 3 24 24 H 1.09006 * 109.47652 * 60.00011 * 1 2 3 25 25 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99791 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99820 * 38.95364 * 12 2 1 28 28 H 1.09006 * 109.47280 * 59.99628 * 13 12 2 29 29 H 1.09001 * 109.47186 * 300.00434 * 13 12 2 30 30 H 1.08995 * 110.94833 * 263.40213 * 16 14 13 31 31 H 1.09000 * 110.94600 * 27.07482 * 16 14 13 32 32 H 1.09001 * 117.51708 * 356.82329 * 18 17 16 33 33 H 1.08994 * 117.51798 * 141.94462 * 18 17 16 34 34 H 1.08995 * 117.51887 * 218.09088 * 19 17 16 35 35 H 1.08998 * 117.51370 * 3.21128 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1455 -2.2875 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2225 2.3468 14 6 2.5950 -0.5332 3.5744 15 1 3.5857 -0.9445 3.3807 16 6 2.6299 0.4005 4.8078 17 6 2.2650 -0.5665 5.9479 18 6 1.7158 -0.0538 7.2729 19 6 3.1194 -0.6624 7.2054 20 6 1.7020 -1.7914 5.2741 21 8 1.3389 -2.7946 5.8411 22 8 1.6664 -1.5954 3.9461 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7092 1.1618 -3.4843 27 1 1.4495 -1.4979 1.4100 28 1 1.0870 0.6163 2.5525 29 1 2.7587 1.0462 2.1182 30 1 3.6267 0.8164 4.9537 31 1 1.8881 1.1940 4.7169 32 1 1.6406 1.0258 7.4029 33 1 0.9349 -0.6414 7.7555 34 1 3.2617 -1.6502 7.6436 35 1 3.9674 0.0170 7.2910 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878819725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:30 Heat of formation + Delta-G solvation = -78.321433 kcal Electronic energy + Delta-G solvation = -17020.204412 eV Core-core repulsion = 14211.179699 eV Total energy + Delta-G solvation = -2809.024714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.21882 -38.95004 -37.76558 -37.53627 -34.67816 -32.52810 -30.14952 -27.35527 -27.09784 -24.59279 -23.53821 -22.79319 -22.15581 -20.76071 -18.50413 -18.07382 -17.86765 -16.92509 -16.65701 -16.26456 -16.03956 -15.20417 -15.01508 -14.62360 -14.15192 -13.96183 -13.73279 -13.57123 -13.17812 -13.03649 -12.82878 -12.62527 -12.44611 -12.31958 -12.17296 -11.96134 -11.71135 -11.48037 -11.20495 -11.05840 -10.98809 -10.48659 -9.02059 -8.09901 -6.20513 0.84243 1.42453 1.44636 1.56860 2.12694 2.44652 2.72037 2.85963 3.18717 3.24197 3.42514 3.66890 3.87330 4.07076 4.09487 4.24114 4.60824 4.63276 4.68884 4.70214 4.78515 4.86654 4.91311 4.93341 4.98474 5.09629 5.16903 5.39158 5.68746 5.77487 5.80233 6.25958 6.35100 6.61141 6.76026 6.92918 7.49369 8.95891 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050964 B = 0.004627 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.279084 B = 6049.783952 C = 6163.200560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.516 4.516 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.690 5.690 13 C 0.063 3.937 14 C 0.090 3.910 15 H 0.108 0.892 16 C -0.098 4.098 17 C -0.235 4.235 18 C -0.123 4.123 19 C -0.117 4.117 20 C 0.506 3.494 21 O -0.504 6.504 22 O -0.363 6.363 23 H 0.025 0.975 24 H 0.064 0.936 25 H 0.024 0.976 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.029 0.971 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 3.138 18.306 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.032 0.968 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.319 5.319 13 C -0.066 4.066 14 C 0.035 3.965 15 H 0.126 0.874 16 C -0.135 4.135 17 C -0.236 4.236 18 C -0.160 4.160 19 C -0.154 4.154 20 C 0.349 3.651 21 O -0.392 6.392 22 O -0.280 6.280 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.047 0.953 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.103 2.766 18.082 18.991 hybrid contribution -1.088 -0.512 -1.042 1.592 sum 4.015 2.254 17.039 17.650 Atomic orbital electron populations 1.22255 1.00343 0.98919 1.00135 1.18966 0.89807 0.93152 0.87421 0.96840 1.21483 1.30400 1.12439 0.91152 0.92923 1.25689 0.95441 0.95877 1.01806 1.70002 1.38017 1.24215 1.23958 0.85478 0.78032 0.78624 0.79289 1.19524 1.20809 1.20422 1.60720 1.57956 1.09629 1.03640 1.22168 1.00078 0.95481 0.88893 1.24046 0.91753 0.85412 0.95257 0.87437 1.22522 1.06356 0.96152 0.88490 1.22280 1.11491 0.96592 0.93274 1.23062 0.97642 1.03254 0.92006 1.23127 0.95588 1.03924 0.92772 1.22607 0.73499 0.87110 0.81849 1.90625 1.47541 1.33178 1.67872 1.87094 1.59494 1.56169 1.25228 0.95594 0.91743 0.95658 0.92966 0.85282 0.95269 0.88155 0.85068 0.87918 0.84403 0.88693 0.88498 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.94 71.98 0.64 -7.05 16 2 C 0.21 10.81 2.57 44.17 0.11 10.93 16 3 H 0.01 0.74 7.80 -2.38 -0.02 0.72 16 4 C -0.52 -28.86 8.84 25.60 0.23 -28.64 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.56 5.30 84.65 0.45 1.00 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.69 -29.08 6.23 -495.47 -3.09 -32.17 16 13 C 0.06 2.01 5.18 86.30 0.45 2.46 16 14 C 0.09 2.30 3.80 31.18 0.12 2.42 16 15 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 16 C -0.10 -1.59 6.48 31.48 0.20 -1.39 16 17 C -0.23 -4.46 2.44 -53.07 -0.13 -4.59 16 18 C -0.12 -1.66 10.28 30.41 0.31 -1.35 16 19 C -0.12 -1.51 10.27 30.42 0.31 -1.19 16 20 C 0.51 15.31 8.34 71.24 0.59 15.91 16 21 O -0.50 -18.50 18.00 21.62 0.39 -18.11 16 22 O -0.36 -11.92 10.29 -52.38 -0.54 -12.46 16 23 H 0.03 1.11 7.45 -2.39 -0.02 1.09 16 24 H 0.06 3.49 6.07 -2.38 -0.01 3.47 16 25 H 0.02 1.20 8.13 -2.39 -0.02 1.18 16 26 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.33 14.29 8.02 -89.69 -0.72 13.57 16 28 H 0.03 0.94 7.44 -2.38 -0.02 0.93 16 29 H 0.10 2.95 8.06 -2.39 -0.02 2.93 16 30 H 0.13 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.10 1.51 7.93 -2.39 -0.02 1.49 16 32 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.06 295.01 2.69 -65.38 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.37 Total: 15.24 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 3.29 Total: -11.48 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.85 Total: -84.76 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.15 Total: -30.57 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.06 2.69 -65.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878819725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.946 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds