Wall clock time and date at job start Sun Mar 29 2020 22:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 C 1.53953 * 112.05821 * 298.98390 * 5 3 2 7 7 C 1.56693 * 105.37266 * 231.34477 * 6 5 3 8 8 C 1.54741 * 104.27835 * 26.28050 * 7 6 5 9 9 C 1.54343 * 103.39215 * 322.41646 * 8 7 6 10 10 H 1.08998 * 111.53434 * 154.80232 * 9 8 7 11 11 N 1.46240 * 110.27467 * 278.38417 * 9 8 7 12 12 C 1.36934 * 125.32971 * 292.25059 * 11 9 8 13 13 H 1.08001 * 120.00121 * 0.02710 * 12 11 9 14 14 C 1.38812 * 119.99945 * 180.02562 * 12 11 9 15 15 N 1.31618 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00266 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47185 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47363 * 120.00083 * 16 14 12 19 19 H 1.48498 * 109.47225 * 240.00582 * 16 14 12 20 20 C 1.46827 * 109.33991 * 112.25448 * 11 9 8 21 21 C 1.54016 * 106.50374 * 19.08385 * 20 11 9 22 22 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 23 23 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 25 25 H 1.08996 * 110.03156 * 351.78935 * 6 5 3 26 26 H 1.08994 * 110.03108 * 113.21486 * 6 5 3 27 27 H 1.09007 * 110.77519 * 267.40281 * 7 6 5 28 28 H 1.09004 * 110.10675 * 144.82628 * 7 6 5 29 29 H 1.09000 * 110.63767 * 203.93467 * 8 7 6 30 30 H 1.09000 * 110.63784 * 80.89404 * 8 7 6 31 31 H 0.97003 * 120.00279 * 179.97438 * 15 14 12 32 32 H 1.08998 * 110.05438 * 259.82057 * 20 11 9 33 33 H 1.09001 * 110.09210 * 138.36407 * 20 11 9 34 34 H 1.09004 * 110.54504 * 213.26397 * 21 20 11 35 35 H 1.09001 * 110.54632 * 90.46853 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1804 0.6144 1.2472 7 6 5.1566 1.6841 1.8455 8 6 4.5747 3.0380 1.3737 9 6 4.0739 2.7338 -0.0542 10 1 3.2744 3.4127 -0.3509 11 7 5.1844 2.7919 -1.0039 12 6 5.8691 3.9251 -1.3532 13 1 5.6004 4.8751 -0.9153 14 6 6.9087 3.8530 -2.2702 15 7 7.2359 2.6954 -2.8043 16 14 7.8433 5.3987 -2.7463 17 1 7.2851 6.5612 -2.0100 18 1 9.2781 5.2363 -2.3994 19 1 7.7101 5.6274 -4.2075 20 6 5.4502 1.4449 -1.5243 21 6 4.1828 0.6130 -1.2526 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.3944 0.3485 1.9539 26 1 4.7419 -0.2749 0.9608 27 1 6.1659 1.5464 1.4573 28 1 5.1544 1.6262 2.9340 29 1 5.3504 3.8036 1.3538 30 1 3.7475 3.3446 2.0138 31 1 7.9622 2.6449 -3.4454 32 1 6.3033 1.0060 -1.0070 33 1 5.6455 1.4892 -2.5957 34 1 4.4435 -0.4253 -1.0473 35 1 3.4956 0.6762 -2.0963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880179464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:25 Heat of formation + Delta-G solvation = -63.927964 kcal Electronic energy + Delta-G solvation = -18226.150605 eV Core-core repulsion = 15417.750039 eV Total energy + Delta-G solvation = -2808.400566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62860 -38.53983 -36.10807 -33.85144 -31.78918 -30.54696 -28.06424 -26.95142 -26.38469 -23.94497 -22.00891 -20.61111 -19.97051 -18.66951 -17.30804 -16.57591 -16.12768 -15.97375 -15.02307 -14.48676 -13.98921 -13.67099 -13.25546 -13.05468 -12.80994 -12.37731 -12.00409 -11.72744 -11.45764 -11.03140 -10.84914 -10.80541 -10.64208 -10.55886 -10.35856 -10.30771 -10.17253 -10.01232 -9.90622 -9.60793 -9.46141 -8.58881 -6.82155 -5.66382 -3.05194 2.51464 2.92875 3.41182 3.47368 3.49473 4.50605 4.80263 5.01841 5.06169 5.15434 5.22465 5.43487 5.52694 5.57072 5.63836 5.76861 5.83732 5.98297 6.06901 6.22905 6.31284 6.37944 6.46991 6.49418 6.58325 6.66156 6.82824 6.89526 7.09003 7.52507 7.67631 7.84840 8.04838 8.34812 9.24221 9.84984 10.47961 11.39747 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035858 B = 0.007531 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.671569 B = 3717.289980 C = 3830.913198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.484 3.516 4 O -0.506 6.506 5 C -0.070 4.070 6 C -0.100 4.100 7 C -0.112 4.112 8 C -0.139 4.139 9 C 0.181 3.819 10 H 0.058 0.942 11 N -0.590 5.590 12 C -0.218 4.218 13 H 0.079 0.921 14 C -0.010 4.010 15 N -0.923 5.923 16 Si 0.913 3.087 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.162 3.838 21 C -0.126 4.126 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.251 0.749 32 H 0.020 0.980 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 -6.759 6.736 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.327 3.673 4 O -0.393 6.393 5 C -0.072 4.072 6 C -0.137 4.137 7 C -0.149 4.149 8 C -0.179 4.179 9 C 0.073 3.927 10 H 0.076 0.924 11 N -0.314 5.314 12 C -0.347 4.347 13 H 0.097 0.903 14 C -0.206 4.206 15 N -0.571 5.571 16 Si 0.744 3.256 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.038 3.962 21 C -0.165 4.165 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.573 -6.398 6.575 12.556 hybrid contribution 0.207 0.737 -0.247 0.805 sum -8.365 -5.661 6.328 11.919 Atomic orbital electron populations 1.23207 0.77265 1.03213 1.02327 1.86541 1.22653 1.33899 1.84344 1.23605 0.91569 0.80903 0.71254 1.90618 1.66992 1.36391 1.45287 1.21841 0.85392 1.00458 0.99520 1.22599 0.98119 0.98578 0.94439 1.22627 0.99337 0.94492 0.98483 1.22859 1.00019 0.97351 0.97666 1.21111 0.91291 0.90128 0.90211 0.92426 1.44103 1.35885 1.04815 1.46634 1.19085 1.09915 0.86189 1.19472 0.90284 1.24773 0.99029 0.97111 0.99640 1.69868 1.31731 1.22282 1.33226 0.86012 0.79506 0.82072 0.78014 1.20505 1.21805 1.21802 1.21503 0.90093 0.82681 1.01953 1.22948 0.99945 0.99426 0.94135 0.92093 0.88429 0.92214 0.92107 0.90667 0.90722 0.92733 0.90623 0.93045 0.93807 0.96226 0.88472 0.91031 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.50 10.56 -39.25 -0.41 -5.91 16 3 C 0.48 8.80 6.53 36.01 0.24 9.04 16 4 O -0.51 -10.32 15.30 -18.75 -0.29 -10.61 16 5 C -0.07 -1.32 0.87 -153.58 -0.13 -1.45 16 6 C -0.10 -1.60 6.16 -24.24 -0.15 -1.75 16 7 C -0.11 -1.90 6.86 -23.82 -0.16 -2.06 16 8 C -0.14 -2.68 6.49 -25.11 -0.16 -2.84 16 9 C 0.18 3.94 3.28 -66.54 -0.22 3.73 16 10 H 0.06 1.38 6.90 -51.93 -0.36 1.02 16 11 N -0.59 -14.94 3.05 -163.24 -0.50 -15.43 16 12 C -0.22 -6.02 9.77 -15.06 -0.15 -6.16 16 13 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 14 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 15 N -0.92 -26.56 10.14 55.49 0.56 -25.99 16 16 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 C 0.16 3.89 5.58 -3.33 -0.02 3.87 16 21 C -0.13 -2.44 5.92 -25.44 -0.15 -2.59 16 22 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 23 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 26 H 0.07 1.13 7.19 -51.93 -0.37 0.76 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 2.62 6.15 -51.93 -0.32 2.30 16 34 H 0.07 1.20 7.38 -51.93 -0.38 0.82 16 35 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 LS Contribution 281.68 15.07 4.24 4.24 Total: -1.00 -30.44 281.68 -6.51 -36.95 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.16 Total: -1.13 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 0.06 Total: 0.85 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.07 Total: -41.43 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.70 Total: -16.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.44 -6.51 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880179464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.976 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds