Wall clock time and date at job start Sun Mar 29 2020 22:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 C 1.53953 * 112.05821 * 298.98390 * 5 3 2 7 7 C 1.56693 * 105.37266 * 231.34477 * 6 5 3 8 8 C 1.54741 * 104.27835 * 26.28050 * 7 6 5 9 9 C 1.54343 * 103.39215 * 322.41646 * 8 7 6 10 10 H 1.08998 * 111.53434 * 154.80232 * 9 8 7 11 11 N 1.46240 * 110.27467 * 278.38417 * 9 8 7 12 12 C 1.36934 * 125.32971 * 292.25059 * 11 9 8 13 13 H 1.08001 * 120.00121 * 0.02710 * 12 11 9 14 14 C 1.38812 * 119.99945 * 180.02562 * 12 11 9 15 15 N 1.31618 * 119.99881 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00266 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47185 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47363 * 120.00083 * 16 14 12 19 19 H 1.48498 * 109.47225 * 240.00582 * 16 14 12 20 20 C 1.46827 * 109.33991 * 112.25448 * 11 9 8 21 21 C 1.54016 * 106.50374 * 19.08385 * 20 11 9 22 22 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 23 23 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 25 25 H 1.08996 * 110.03156 * 351.78935 * 6 5 3 26 26 H 1.08994 * 110.03108 * 113.21486 * 6 5 3 27 27 H 1.09007 * 110.77519 * 267.40281 * 7 6 5 28 28 H 1.09004 * 110.10675 * 144.82628 * 7 6 5 29 29 H 1.09000 * 110.63767 * 203.93467 * 8 7 6 30 30 H 1.09000 * 110.63784 * 80.89404 * 8 7 6 31 31 H 0.97003 * 120.00279 * 179.97438 * 15 14 12 32 32 H 1.08998 * 110.05438 * 259.82057 * 20 11 9 33 33 H 1.09001 * 110.09210 * 138.36407 * 20 11 9 34 34 H 1.09004 * 110.54504 * 213.26397 * 21 20 11 35 35 H 1.09001 * 110.54632 * 90.46853 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1804 0.6144 1.2472 7 6 5.1566 1.6841 1.8455 8 6 4.5747 3.0380 1.3737 9 6 4.0739 2.7338 -0.0542 10 1 3.2744 3.4127 -0.3509 11 7 5.1844 2.7919 -1.0039 12 6 5.8691 3.9251 -1.3532 13 1 5.6004 4.8751 -0.9153 14 6 6.9087 3.8530 -2.2702 15 7 7.2359 2.6954 -2.8043 16 14 7.8433 5.3987 -2.7463 17 1 7.2851 6.5612 -2.0100 18 1 9.2781 5.2363 -2.3994 19 1 7.7101 5.6274 -4.2075 20 6 5.4502 1.4449 -1.5243 21 6 4.1828 0.6130 -1.2526 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.3944 0.3485 1.9539 26 1 4.7419 -0.2749 0.9608 27 1 6.1659 1.5464 1.4573 28 1 5.1544 1.6262 2.9340 29 1 5.3504 3.8036 1.3538 30 1 3.7475 3.3446 2.0138 31 1 7.9622 2.6449 -3.4454 32 1 6.3033 1.0060 -1.0070 33 1 5.6455 1.4892 -2.5957 34 1 4.4435 -0.4253 -1.0473 35 1 3.4956 0.6762 -2.0963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880179464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:25 Heat of formation + Delta-G solvation = -81.883925 kcal Electronic energy + Delta-G solvation = -18226.929234 eV Core-core repulsion = 15417.750039 eV Total energy + Delta-G solvation = -2809.179195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06952 -40.04942 -37.46217 -35.70172 -33.47912 -32.40345 -29.39560 -28.54655 -27.82261 -25.81591 -23.42469 -22.31246 -21.54348 -20.20974 -19.00023 -18.05797 -17.71723 -17.28663 -16.77249 -16.24683 -15.51495 -15.29598 -14.67654 -14.59532 -14.19188 -14.04806 -13.44462 -13.24998 -13.02397 -12.79486 -12.71273 -12.43971 -12.10506 -11.96370 -11.94979 -11.88521 -11.79857 -11.71308 -11.55094 -11.41016 -11.04593 -10.65931 -8.85964 -7.78304 -5.18956 1.10691 1.47087 1.47456 1.57689 1.67983 2.50751 3.26684 3.34733 3.61007 3.72272 3.81983 4.06858 4.33241 4.33724 4.35001 4.37072 4.42667 4.61322 4.67433 4.73259 4.83429 4.90075 4.98660 5.03414 5.11405 5.25995 5.31851 5.37052 5.48715 5.54443 5.65663 5.81206 6.30183 6.70004 7.14022 7.81107 8.42672 9.26009 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035858 B = 0.007531 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.671569 B = 3717.289980 C = 3830.913198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.353 6.353 3 C 0.490 3.510 4 O -0.535 6.535 5 C -0.068 4.068 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.135 4.135 9 C 0.168 3.832 10 H 0.030 0.970 11 N -0.607 5.607 12 C -0.232 4.232 13 H 0.076 0.924 14 C -0.062 4.062 15 N -0.947 5.947 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.293 1.293 20 C 0.169 3.831 21 C -0.114 4.114 22 H 0.056 0.944 23 H 0.138 0.862 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.247 0.753 32 H 0.002 0.998 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 -8.006 8.156 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.334 3.666 4 O -0.424 6.424 5 C -0.069 4.069 6 C -0.129 4.129 7 C -0.144 4.144 8 C -0.174 4.174 9 C 0.061 3.939 10 H 0.048 0.952 11 N -0.332 5.332 12 C -0.360 4.360 13 H 0.094 0.906 14 C -0.255 4.255 15 N -0.596 5.596 16 Si 0.805 3.195 17 H -0.195 1.195 18 H -0.217 1.217 19 H -0.220 1.220 20 C 0.045 3.955 21 C -0.152 4.152 22 H 0.075 0.925 23 H 0.156 0.844 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.631 -7.666 8.018 14.690 hybrid contribution 0.432 1.120 -0.698 1.389 sum -9.199 -6.546 7.320 13.455 Atomic orbital electron populations 1.23611 0.74741 1.05949 1.02459 1.86510 1.24970 1.31855 1.83540 1.23338 0.91180 0.81357 0.70730 1.90615 1.67478 1.37559 1.46762 1.21742 0.86445 0.98205 1.00544 1.22631 0.98515 0.98348 0.93431 1.22572 0.98115 0.93151 1.00525 1.22755 0.99973 0.98374 0.96315 1.21226 0.89658 0.92156 0.90843 0.95210 1.44303 1.36399 1.04729 1.47727 1.19348 1.10214 0.87094 1.19391 0.90632 1.25539 1.00104 0.99920 0.99929 1.70090 1.32004 1.23893 1.33646 0.85039 0.78020 0.79133 0.77324 1.19501 1.21691 1.21962 1.21243 0.91935 0.82971 0.99391 1.22808 0.97465 1.00348 0.94586 0.92521 0.84391 0.91648 0.89415 0.89043 0.93032 0.89341 0.92871 0.91213 0.94300 0.97955 0.92067 0.87682 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -9.69 10.56 -51.38 -0.54 -10.24 16 3 C 0.49 16.87 6.53 71.24 0.47 17.33 16 4 O -0.53 -21.31 15.30 21.96 0.34 -20.97 16 5 C -0.07 -2.43 0.87 -51.58 -0.05 -2.47 16 6 C -0.09 -2.65 6.16 32.21 0.20 -2.45 16 7 C -0.11 -3.38 6.86 32.48 0.22 -3.16 16 8 C -0.13 -5.10 6.49 31.64 0.21 -4.90 16 9 C 0.17 7.40 3.28 46.03 0.15 7.55 16 10 H 0.03 1.47 6.90 -2.39 -0.02 1.46 16 11 N -0.61 -31.55 3.05 -670.37 -2.04 -33.59 16 12 C -0.23 -13.13 9.77 84.03 0.82 -12.31 16 13 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 14 C -0.06 -3.54 5.48 84.86 0.47 -3.08 16 15 N -0.95 -56.13 10.14 21.65 0.22 -55.91 16 16 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 C 0.17 8.29 5.58 86.66 0.48 8.77 16 21 C -0.11 -4.28 5.92 31.43 0.19 -4.09 16 22 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 23 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 25 H 0.09 2.11 7.78 -2.39 -0.02 2.09 16 26 H 0.09 2.39 7.19 -2.39 -0.02 2.37 16 27 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.05 2.22 7.74 -2.39 -0.02 2.21 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 31 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 3.43 6.15 -2.39 -0.01 3.42 16 34 H 0.10 3.24 7.38 -2.38 -0.02 3.22 16 35 H 0.05 2.07 7.98 -2.39 -0.02 2.05 16 Total: -1.00 -67.67 281.68 5.42 -62.25 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.07 Total: 7.32 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.35 Total: 2.89 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -1.82 Total: -89.50 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.21 Total: -31.21 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -67.67 5.42 -62.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880179464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.637 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds