Wall clock time and date at job start Sun Mar 29 2020 22:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46855 * 90.00279 * 8 6 4 10 10 H 1.48499 * 109.47326 * 210.00609 * 8 6 4 11 11 H 1.48497 * 109.46885 * 330.00481 * 8 6 4 12 12 C 1.38256 * 119.99863 * 179.71763 * 2 1 3 13 13 N 1.31070 * 126.36944 * 179.97438 * 12 2 1 14 14 N 1.28656 * 109.31457 * 179.82774 * 13 12 2 15 15 C 1.30074 * 109.54692 * 0.45152 * 14 13 12 16 16 C 1.50692 * 126.21342 * 179.70974 * 15 14 13 17 17 C 1.53002 * 109.47396 * 60.02064 * 16 15 14 18 18 C 1.52999 * 109.47072 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47042 * 300.01664 * 16 15 14 20 20 O 1.34582 * 126.37140 * 0.28396 * 12 2 1 21 21 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 22 22 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 23 23 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 24 24 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 25 25 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 26 26 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46679 * 60.00220 * 17 16 15 28 28 H 1.09005 * 109.46536 * 179.97438 * 17 16 15 29 29 H 1.09000 * 109.47028 * 299.99651 * 17 16 15 30 30 H 1.09001 * 109.47153 * 59.99996 * 18 16 15 31 31 H 1.08996 * 109.47528 * 179.97438 * 18 16 15 32 32 H 1.08998 * 109.47572 * 300.00128 * 18 16 15 33 33 H 1.09000 * 109.46712 * 60.00761 * 19 16 15 34 34 H 1.09000 * 109.47120 * 180.02562 * 19 16 15 35 35 H 1.08993 * 109.47146 * 300.00169 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 1 2.1068 1.0906 -2.2417 6 6 3.1331 2.8738 -1.6729 7 7 3.5563 3.6164 -0.6732 8 14 3.4525 3.4083 -3.4340 9 1 2.3244 4.2495 -3.9082 10 1 4.7128 4.1915 -3.4928 11 1 3.5742 2.2089 -4.3010 12 6 2.1562 -1.1973 0.0059 13 7 3.4588 -1.3428 0.0061 14 7 3.7470 -2.5966 0.0161 15 6 2.6499 -3.2954 0.0130 16 6 2.5521 -4.7991 0.0157 17 6 3.2330 -5.3522 1.2693 18 6 1.0796 -5.2144 0.0097 19 6 3.2444 -5.3575 -1.2293 20 8 1.6168 -2.4303 0.0066 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8901 0.5138 24 1 1.6063 2.0296 0.5094 25 1 3.1478 1.1396 0.5181 26 1 4.0339 4.4418 -0.8505 27 1 2.7397 -4.9545 2.1561 28 1 3.1618 -6.4400 1.2713 29 1 4.2821 -5.0564 1.2734 30 1 0.5946 -4.8204 -0.8834 31 1 1.0088 -6.3021 0.0112 32 1 0.5862 -4.8166 0.8965 33 1 4.2935 -5.0616 -1.2250 34 1 3.1733 -6.4451 -1.2275 35 1 2.7593 -4.9634 -2.1222 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881733979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:30 Heat of formation + Delta-G solvation = 36.042413 kcal Electronic energy + Delta-G solvation = -17352.769073 eV Core-core repulsion = 14580.996299 eV Total energy + Delta-G solvation = -2771.772774 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.24407 -37.16170 -36.15710 -35.29039 -32.65824 -29.38430 -28.03354 -27.39462 -27.32858 -25.50278 -23.30076 -22.97447 -20.72991 -19.67812 -16.98894 -16.90388 -16.28803 -15.67062 -15.29557 -14.51579 -14.15630 -13.87665 -13.61314 -13.41352 -12.38961 -12.37273 -12.20690 -12.04991 -11.74772 -11.73685 -11.56942 -11.37753 -11.15232 -11.12787 -10.96754 -10.84960 -10.66302 -10.22677 -10.07669 -9.91976 -9.26349 -8.49709 -7.11677 -6.09635 -4.16582 2.12418 2.47884 3.28135 3.35094 3.37882 3.41393 3.81589 4.39868 4.55359 4.83539 4.84207 5.14752 5.24071 5.43059 5.49125 5.54656 5.69173 5.71300 5.81654 5.82760 5.82908 5.93579 5.99000 6.03470 6.08027 6.23830 6.26738 6.45407 6.84150 7.24623 7.67046 7.85846 7.95875 8.10330 8.85308 9.34061 9.48953 10.96842 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.034834 B = 0.005960 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.618861 B = 4696.753660 C = 4948.714815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.553 5.553 3 C 0.264 3.736 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.438 3.562 13 N -0.343 5.343 14 N -0.257 5.257 15 C 0.102 3.898 16 C 0.047 3.953 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.139 4.139 20 O -0.259 6.259 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.265 0.735 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 -15.545 2.298 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.279 5.279 3 C 0.147 3.853 4 C -0.572 4.572 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.139 3.861 13 N -0.201 5.201 14 N -0.102 5.102 15 C -0.114 4.114 16 C 0.045 3.955 17 C -0.196 4.196 18 C -0.201 4.201 19 C -0.197 4.197 20 O -0.141 6.141 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.837 -14.907 2.349 15.847 hybrid contribution -1.185 0.310 -1.048 1.612 sum -6.022 -14.597 1.301 15.844 Atomic orbital electron populations 1.21624 0.79047 1.02132 1.01612 1.46396 1.05212 1.00133 1.76142 1.19556 0.92431 0.75257 0.98071 1.21418 1.37086 1.06587 0.92076 0.92364 1.24898 0.95051 0.96173 0.97631 1.69920 1.38116 1.14279 1.30812 0.86454 0.77751 0.78599 0.84396 1.20590 1.20926 1.19892 1.23639 0.87574 0.80632 0.94302 1.75035 1.07717 1.07749 1.29627 1.73962 1.24796 0.97811 1.13628 1.26832 0.80660 0.94524 1.09349 1.18864 0.97499 0.81242 0.97914 1.21899 1.01577 1.00556 0.95569 1.21881 0.93850 1.01514 1.02887 1.21902 1.01549 1.00494 0.95726 1.84651 1.38896 1.15860 1.74645 0.92982 0.92590 0.90327 0.93755 0.93176 0.92509 0.92382 0.91367 0.91146 0.92026 0.91410 0.92076 0.91132 0.91363 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 10.66 59.85 0.64 2.32 16 2 N -0.55 -12.24 2.95 -185.16 -0.55 -12.79 16 3 C 0.26 6.79 5.35 -5.19 -0.03 6.76 16 4 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 7 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.44 9.94 8.51 -86.88 -0.74 9.20 16 13 N -0.34 -8.48 11.61 29.86 0.35 -8.14 16 14 N -0.26 -5.55 12.20 32.59 0.40 -5.15 16 15 C 0.10 1.85 6.57 -13.03 -0.09 1.76 16 16 C 0.05 0.59 0.99 -155.66 -0.15 0.44 16 17 C -0.14 -1.50 8.46 37.16 0.31 -1.19 16 18 C -0.14 -1.51 8.05 37.16 0.30 -1.21 16 19 C -0.14 -1.57 8.46 37.16 0.31 -1.26 16 20 O -0.26 -5.09 9.83 3.72 0.04 -5.05 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.82 7.74 -51.93 -0.40 0.42 16 23 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 24 H 0.04 1.13 7.89 -51.93 -0.41 0.72 16 25 H 0.05 1.43 7.68 -51.93 -0.40 1.03 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 301.36 15.07 4.54 4.54 Total: -1.00 -32.09 301.36 -4.76 -36.85 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -5.39 Total: -5.02 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 0.14 Total: 3.28 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.93 Total: -51.40 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.04 Total: -5.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.09 -4.76 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881733979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.891 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds