Wall clock time and date at job start Sun Mar 29 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47597 * 2 1 4 4 C 1.53000 * 109.47238 * 239.99391 * 2 1 3 5 5 C 1.50700 * 109.46740 * 119.99792 * 2 1 3 6 6 N 1.30071 * 126.21627 * 59.97449 * 5 2 1 7 7 N 1.28653 * 109.54641 * 180.02562 * 6 5 2 8 8 C 1.31069 * 109.32054 * 0.02562 * 7 6 5 9 9 N 1.38257 * 126.37621 * 179.97438 * 8 7 6 10 10 C 1.46502 * 119.99746 * 0.03708 * 9 8 7 11 11 C 1.52994 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47358 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99590 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99770 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99446 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00419 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47167 * 89.99620 * 16 14 12 18 18 H 1.48498 * 109.46990 * 209.99668 * 16 14 12 19 19 H 1.48501 * 109.46838 * 329.99605 * 16 14 12 20 20 O 1.34584 * 107.25699 * 359.97438 * 8 7 6 21 21 H 1.08999 * 109.47198 * 300.00675 * 1 2 3 22 22 H 1.09009 * 109.46807 * 60.00238 * 1 2 3 23 23 H 1.08994 * 109.47738 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47235 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.46676 * 299.99733 * 3 2 1 26 26 H 1.08999 * 109.47398 * 59.99447 * 3 2 1 27 27 H 1.09000 * 109.47439 * 300.00207 * 4 2 1 28 28 H 1.08999 * 109.47008 * 60.00282 * 4 2 1 29 29 H 1.09004 * 109.47279 * 180.02562 * 4 2 1 30 30 H 0.96995 * 120.00428 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.47527 * 300.00415 * 10 9 8 32 32 H 1.09002 * 109.46788 * 60.00317 * 10 9 8 33 33 H 1.09001 * 109.47180 * 299.99989 * 11 10 9 34 34 H 1.08994 * 109.47440 * 59.99951 * 11 10 9 35 35 H 0.96998 * 119.99927 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.7932 -1.9470 1.5553 7 7 2.3776 -2.2203 2.6684 8 6 3.0148 -1.1577 3.0960 9 7 3.7591 -1.0598 4.2570 10 6 3.8912 -2.2195 5.1424 11 6 4.7582 -1.8460 6.3463 12 6 4.8946 -3.0391 7.2567 13 1 4.4116 -3.9708 7.0018 14 6 5.6370 -2.9415 8.4145 15 7 5.7556 -3.9826 9.2092 16 14 6.4731 -1.3302 8.8549 17 1 5.5506 -0.5008 9.6712 18 1 7.7071 -1.6092 9.6325 19 1 6.8262 -0.5997 7.6112 20 8 2.8097 -0.1796 2.1947 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -1.7490 -1.2491 28 1 1.6767 -0.2076 -2.1392 29 1 3.1300 -0.7218 -1.2489 30 1 4.1939 -0.2234 4.4853 31 1 2.9042 -2.5276 5.4875 32 1 4.3584 -3.0405 4.5984 33 1 5.7453 -1.5377 6.0015 34 1 4.2907 -1.0252 6.8901 35 1 6.2775 -3.9139 10.0239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882174390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:31 Heat of formation + Delta-G solvation = 24.728332 kcal Electronic energy + Delta-G solvation = -16680.677048 eV Core-core repulsion = 13908.413658 eV Total energy + Delta-G solvation = -2772.263390 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.73192 -37.39777 -36.26213 -35.75842 -33.08774 -30.75387 -28.74731 -27.58682 -27.55621 -25.04468 -23.80154 -22.17661 -20.88075 -19.96459 -17.94304 -17.13907 -16.90774 -16.14011 -15.39749 -14.47627 -14.36044 -14.22574 -14.09372 -14.05760 -12.69567 -12.63971 -12.57750 -12.06156 -12.04182 -11.95374 -11.71734 -11.58455 -11.50970 -11.30991 -11.19935 -10.76600 -10.51785 -10.26462 -10.05959 -9.88761 -9.42703 -8.67631 -7.83549 -6.16772 -4.18048 1.67197 1.98580 2.87545 3.21474 3.29435 3.30102 3.54504 4.28194 4.32421 4.59507 4.60033 4.87932 5.15805 5.19319 5.29806 5.34010 5.45099 5.48424 5.57188 5.59188 5.63510 5.77537 5.89921 5.97958 6.00742 6.04959 6.09922 6.40423 6.82401 7.10403 7.19808 7.44314 7.62122 8.36251 8.83346 8.87109 9.42306 10.95966 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056984 B = 0.004179 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.246758 B = 6698.842159 C = 6988.427329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 C -0.146 4.146 4 C -0.140 4.140 5 C 0.123 3.877 6 N -0.257 5.257 7 N -0.351 5.351 8 C 0.428 3.572 9 N -0.673 5.673 10 C 0.150 3.850 11 C -0.021 4.021 12 C -0.525 4.525 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 O -0.253 6.253 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.412 0.588 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.952 12.128 -18.407 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.041 3.959 3 C -0.204 4.204 4 C -0.198 4.198 5 C -0.093 4.093 6 N -0.101 5.101 7 N -0.209 5.209 8 C 0.127 3.873 9 N -0.321 5.321 10 C 0.030 3.970 11 C -0.059 4.059 12 C -0.563 4.563 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.708 3.292 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.191 1.191 20 O -0.134 6.134 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.249 0.751 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.333 10.659 -18.184 22.317 hybrid contribution 1.256 2.349 0.732 2.762 sum -6.077 13.007 -17.453 22.599 Atomic orbital electron populations 1.21916 0.91820 1.03532 1.02485 1.18984 0.96172 0.94319 0.86391 1.21909 1.01850 0.93796 1.02800 1.21917 1.01552 1.01290 0.94992 1.27079 0.97244 0.91355 0.93615 1.73974 1.17375 1.11801 1.06967 1.74925 1.17284 1.20936 1.07778 1.23654 0.93653 0.82667 0.87356 1.44194 1.52718 1.17878 1.17262 1.21746 1.01423 0.84526 0.89307 1.19823 0.94881 0.98673 0.92533 1.20832 1.32920 0.97425 1.05112 0.90359 1.24972 0.95757 0.96468 0.95899 1.69893 1.40595 1.29761 1.13063 0.86765 0.79409 0.84144 0.78848 1.20149 1.21149 1.19113 1.84713 1.57964 1.40880 1.29848 0.92233 0.91030 0.91059 0.91922 0.91094 0.91926 0.91062 0.91031 0.92229 0.75133 0.91332 0.91311 0.95703 0.96131 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.46 37.15 0.31 -0.89 16 2 C 0.04 0.43 0.99 -155.66 -0.15 0.28 16 3 C -0.15 -1.20 8.05 37.16 0.30 -0.90 16 4 C -0.14 -1.20 8.46 37.16 0.31 -0.89 16 5 C 0.12 1.80 6.57 -13.03 -0.09 1.71 16 6 N -0.26 -4.50 12.20 32.59 0.40 -4.10 16 7 N -0.35 -6.84 11.90 29.86 0.36 -6.49 16 8 C 0.43 7.59 9.17 -86.89 -0.80 6.79 16 9 N -0.67 -11.39 5.70 -62.17 -0.35 -11.74 16 10 C 0.15 2.95 5.95 -4.04 -0.02 2.92 16 11 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 12 C -0.52 -14.32 9.66 -34.44 -0.33 -14.66 16 13 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 16 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 20 O -0.25 -4.00 10.35 3.69 0.04 -3.96 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.41 5.95 8.60 -40.82 -0.35 5.60 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 34 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -31.21 298.48 -4.99 -36.20 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.35 Total: -0.06 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.68 Total: -4.30 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 1.17 Total: -48.40 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.21 -4.99 -36.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882174390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.933 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds