Wall clock time and date at job start Sun Mar 29 2020 22:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47597 * 2 1 4 4 C 1.53000 * 109.47238 * 239.99391 * 2 1 3 5 5 C 1.50700 * 109.46740 * 119.99792 * 2 1 3 6 6 N 1.30071 * 126.21627 * 59.97449 * 5 2 1 7 7 N 1.28653 * 109.54641 * 180.02562 * 6 5 2 8 8 C 1.31069 * 109.32054 * 0.02562 * 7 6 5 9 9 N 1.38257 * 126.37621 * 179.97438 * 8 7 6 10 10 C 1.46502 * 119.99746 * 0.03708 * 9 8 7 11 11 C 1.52994 * 109.47244 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47358 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99590 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99770 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99446 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00419 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47167 * 89.99620 * 16 14 12 18 18 H 1.48498 * 109.46990 * 209.99668 * 16 14 12 19 19 H 1.48501 * 109.46838 * 329.99605 * 16 14 12 20 20 O 1.34584 * 107.25699 * 359.97438 * 8 7 6 21 21 H 1.08999 * 109.47198 * 300.00675 * 1 2 3 22 22 H 1.09009 * 109.46807 * 60.00238 * 1 2 3 23 23 H 1.08994 * 109.47738 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47235 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.46676 * 299.99733 * 3 2 1 26 26 H 1.08999 * 109.47398 * 59.99447 * 3 2 1 27 27 H 1.09000 * 109.47439 * 300.00207 * 4 2 1 28 28 H 1.08999 * 109.47008 * 60.00282 * 4 2 1 29 29 H 1.09004 * 109.47279 * 180.02562 * 4 2 1 30 30 H 0.96995 * 120.00428 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.47527 * 300.00415 * 10 9 8 32 32 H 1.09002 * 109.46788 * 60.00317 * 10 9 8 33 33 H 1.09001 * 109.47180 * 299.99989 * 11 10 9 34 34 H 1.08994 * 109.47440 * 59.99951 * 11 10 9 35 35 H 0.96998 * 119.99927 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.7932 -1.9470 1.5553 7 7 2.3776 -2.2203 2.6684 8 6 3.0148 -1.1577 3.0960 9 7 3.7591 -1.0598 4.2570 10 6 3.8912 -2.2195 5.1424 11 6 4.7582 -1.8460 6.3463 12 6 4.8946 -3.0391 7.2567 13 1 4.4116 -3.9708 7.0018 14 6 5.6370 -2.9415 8.4145 15 7 5.7556 -3.9826 9.2092 16 14 6.4731 -1.3302 8.8549 17 1 5.5506 -0.5008 9.6712 18 1 7.7071 -1.6092 9.6325 19 1 6.8262 -0.5997 7.6112 20 8 2.8097 -0.1796 2.1947 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -1.7490 -1.2491 28 1 1.6767 -0.2076 -2.1392 29 1 3.1300 -0.7218 -1.2489 30 1 4.1939 -0.2234 4.4853 31 1 2.9042 -2.5276 5.4875 32 1 4.3584 -3.0405 4.5984 33 1 5.7453 -1.5377 6.0015 34 1 4.2907 -1.0252 6.8901 35 1 6.2775 -3.9139 10.0239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882174390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:31 Heat of formation + Delta-G solvation = -0.074320 kcal Electronic energy + Delta-G solvation = -16681.752571 eV Core-core repulsion = 13908.413658 eV Total energy + Delta-G solvation = -2773.338913 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.03400 -38.40988 -37.56769 -37.07783 -35.06938 -32.52646 -30.15450 -28.28487 -28.22621 -26.84177 -24.99990 -23.65402 -22.57073 -20.95751 -19.44457 -18.81944 -18.44678 -17.22664 -16.63675 -16.24387 -15.91098 -15.72605 -15.01498 -14.83839 -14.65882 -13.50160 -13.47063 -13.41115 -13.15976 -13.07137 -12.90175 -12.70787 -12.63669 -12.49292 -12.23440 -12.06756 -12.01966 -11.81778 -11.65786 -11.52971 -11.41062 -10.79083 -9.22103 -8.31003 -6.38633 0.41574 0.66411 1.38950 1.40955 1.51745 1.53466 2.35505 2.36721 3.04181 3.30450 3.70722 3.83341 3.87722 4.04898 4.21214 4.30514 4.35504 4.62409 4.68179 4.73511 4.75439 4.82679 4.93944 4.94647 5.04205 5.12238 5.23222 5.33731 5.34238 5.37516 5.50542 5.72845 6.14988 6.27824 6.69657 7.25781 7.52214 8.85494 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056984 B = 0.004179 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.246758 B = 6698.842159 C = 6988.427329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.037 3.963 3 C -0.143 4.143 4 C -0.137 4.137 5 C 0.144 3.856 6 N -0.292 5.292 7 N -0.387 5.387 8 C 0.421 3.579 9 N -0.664 5.664 10 C 0.169 3.831 11 C -0.013 4.013 12 C -0.537 4.537 13 H 0.034 0.966 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.238 1.238 20 O -0.248 6.248 21 H 0.053 0.947 22 H 0.106 0.894 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.426 0.574 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 15.447 -20.220 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.036 3.964 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.072 4.072 6 N -0.135 5.135 7 N -0.245 5.245 8 C 0.119 3.881 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.051 4.051 12 C -0.576 4.576 13 H 0.053 0.947 14 C -0.190 4.190 15 N -0.588 5.588 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.161 1.161 20 O -0.128 6.128 21 H 0.072 0.928 22 H 0.125 0.875 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.072 0.928 30 H 0.266 0.734 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.283 13.987 -20.037 25.498 hybrid contribution 1.137 1.260 1.173 2.063 sum -6.146 15.247 -18.864 25.022 Atomic orbital electron populations 1.21939 0.90479 1.03117 1.03960 1.19472 0.97144 0.95236 0.84589 1.21928 1.01533 0.92364 1.04190 1.21940 1.01208 1.00829 0.95517 1.28338 0.94541 0.90750 0.93596 1.73927 1.18972 1.13493 1.07061 1.74843 1.18314 1.22369 1.08968 1.23562 0.93867 0.82918 0.87780 1.43748 1.53088 1.17632 1.16878 1.21249 1.00069 0.85074 0.88868 1.19665 0.96165 0.96814 0.92432 1.21159 1.32276 0.97819 1.06336 0.94719 1.26013 0.96576 1.00763 0.95669 1.70062 1.42094 1.32718 1.13931 0.85587 0.77981 0.78994 0.79623 1.19047 1.21264 1.16117 1.84745 1.58098 1.40273 1.29714 0.92821 0.87499 0.92453 0.92450 0.87851 0.92451 0.92456 0.87499 0.92818 0.73438 0.92692 0.92697 0.94243 0.94366 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.46 71.98 0.61 -1.40 16 2 C 0.04 0.66 0.99 -52.93 -0.05 0.61 16 3 C -0.14 -1.87 8.05 71.98 0.58 -1.29 16 4 C -0.14 -2.01 8.46 71.98 0.61 -1.40 16 5 C 0.14 4.07 6.57 88.37 0.58 4.65 16 6 N -0.29 -10.28 12.20 -165.26 -2.02 -12.29 16 7 N -0.39 -15.31 11.90 -173.50 -2.06 -17.38 16 8 C 0.42 14.73 9.17 179.04 1.64 16.38 16 9 N -0.66 -21.76 5.70 -460.81 -2.63 -24.38 16 10 C 0.17 6.65 5.95 86.38 0.51 7.17 16 11 C -0.01 -0.56 4.16 29.85 0.12 -0.43 16 12 C -0.54 -29.94 9.66 25.60 0.25 -29.69 16 13 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 14 C 0.01 0.41 5.47 84.65 0.46 0.88 16 15 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 16 Si 0.96 41.71 27.47 68.60 1.88 43.60 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 20 O -0.25 -7.51 10.35 -9.71 -0.10 -7.61 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.43 11.35 8.60 -92.71 -0.80 10.55 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.04 1.60 7.20 -2.39 -0.02 1.59 16 34 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.89 298.48 0.92 -68.98 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.22 Total: 11.72 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.31 Total: -4.53 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.41 Total: -112.16 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.10 Total: -7.61 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.60 kcal Total: -69.89 0.92 -68.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882174390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.901 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds