Wall clock time and date at job start Sun Mar 29 2020 22:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47482 * 300.00294 * 3 2 1 5 5 C 1.52999 * 109.46961 * 60.00654 * 3 2 1 6 6 C 1.50706 * 109.47161 * 179.97438 * 3 2 1 7 7 N 1.30068 * 126.21332 * 300.02916 * 6 3 2 8 8 N 1.28656 * 109.54367 * 179.97438 * 7 6 3 9 9 C 1.31072 * 109.31852 * 0.02562 * 8 7 6 10 10 N 1.38255 * 126.37236 * 180.02562 * 9 8 7 11 11 C 1.46495 * 120.00087 * 359.97235 * 10 9 8 12 12 C 1.50700 * 109.47262 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99979 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00064 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99851 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47218 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47000 * 120.00473 * 16 14 12 19 19 H 1.48496 * 109.47092 * 240.00487 * 16 14 12 20 20 O 1.34587 * 107.25689 * 359.73705 * 9 8 7 21 21 H 1.09004 * 109.47298 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46993 * 299.99360 * 1 2 3 23 23 H 1.09004 * 109.47552 * 59.99646 * 1 2 3 24 24 H 1.09001 * 109.46997 * 240.00082 * 2 1 3 25 25 H 1.08996 * 109.47134 * 120.00834 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 28 28 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.46716 * 299.99630 * 5 3 2 30 30 H 1.09000 * 109.47486 * 59.99547 * 5 3 2 31 31 H 1.09001 * 109.47362 * 180.02562 * 5 3 2 32 32 H 0.97001 * 119.99831 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47240 * 300.00466 * 11 10 9 34 34 H 1.09001 * 109.46857 * 60.00059 * 11 10 9 35 35 H 0.96992 * 119.99843 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 1.5301 2.1636 1.2493 6 6 3.5470 1.4424 0.0006 7 7 4.3151 0.9174 0.9096 8 7 5.5477 1.1015 0.5903 9 6 5.6088 1.7567 -0.5433 10 7 6.7589 2.1399 -1.2078 11 6 8.0723 1.8148 -0.6461 12 6 9.1521 2.3396 -1.5570 13 1 8.8866 2.8633 -2.4634 14 6 10.4790 2.1520 -1.2326 15 7 10.8023 1.5147 -0.1286 16 14 11.8175 2.8031 -2.3613 17 1 11.1955 3.4778 -3.5289 18 1 12.6608 3.7748 -1.6199 19 1 12.6601 1.6747 -2.8322 20 8 4.3435 1.9815 -0.9432 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.4400 2.1638 -1.2491 27 1 1.8933 1.6499 -2.1392 28 1 1.8930 3.1916 -1.2489 29 1 0.4401 2.1636 1.2493 30 1 1.8934 1.6497 2.1393 31 1 1.8930 3.1914 1.2492 32 1 6.6963 2.6241 -2.0460 33 1 8.1708 2.2745 0.3373 34 1 8.1699 0.7332 -0.5530 35 1 11.7357 1.3831 0.0998 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882274425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:39 Heat of formation + Delta-G solvation = 22.375918 kcal Electronic energy + Delta-G solvation = -16911.258057 eV Core-core repulsion = 14138.892659 eV Total energy + Delta-G solvation = -2772.365398 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.35017 -37.82046 -35.58140 -35.37860 -32.70914 -30.70162 -28.98321 -27.53476 -26.92130 -24.68172 -23.33623 -22.47821 -21.33824 -19.25979 -17.90991 -16.76680 -16.41163 -15.72154 -15.36983 -14.83129 -14.67275 -14.18509 -13.50472 -13.22433 -12.84643 -12.53945 -12.32898 -12.17475 -12.01278 -11.67415 -11.46957 -11.36810 -11.10894 -11.07963 -10.99666 -10.87656 -10.74390 -10.34370 -10.10868 -9.90004 -9.50069 -8.65801 -7.30735 -6.26565 -4.34704 2.03756 2.42666 3.19318 3.26077 3.26763 3.29967 3.94813 4.26828 4.53178 4.69660 4.83714 5.02549 5.10186 5.18900 5.29090 5.44999 5.53302 5.66155 5.68171 5.76386 5.81270 5.85727 5.92044 5.95621 6.01628 6.21630 6.28398 6.37065 7.02389 7.34196 7.44313 7.76978 7.84640 8.23929 8.69712 9.23318 9.32453 10.83403 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.063527 B = 0.004327 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.654916 B = 6469.094657 C = 6649.851202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C 0.051 3.949 4 C -0.147 4.147 5 C -0.141 4.141 6 C 0.107 3.893 7 N -0.256 5.256 8 N -0.358 5.358 9 C 0.430 3.570 10 N -0.658 5.658 11 C 0.269 3.731 12 C -0.548 4.548 13 H 0.066 0.934 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.908 3.092 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.281 1.281 20 O -0.259 6.259 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.407 0.593 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.594 0.715 -1.879 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C 0.049 3.951 4 C -0.204 4.204 5 C -0.199 4.199 6 C -0.109 4.109 7 N -0.101 5.101 8 N -0.217 5.217 9 C 0.129 3.871 10 N -0.304 5.304 11 C 0.150 3.850 12 C -0.586 4.586 13 H 0.085 0.915 14 C -0.138 4.138 15 N -0.518 5.518 16 Si 0.735 3.265 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.206 1.206 20 O -0.140 6.140 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.867 -0.034 -0.587 17.876 hybrid contribution 0.623 1.162 -2.034 2.424 sum -17.244 1.128 -2.620 17.478 Atomic orbital electron populations 1.21899 0.95004 1.01954 1.02186 1.21606 0.96037 0.93942 1.03421 1.18888 0.80904 0.97566 0.97762 1.21940 1.01457 1.00687 0.96339 1.21957 1.01108 1.00379 0.96412 1.26874 0.95659 1.01610 0.86713 1.73923 0.96416 1.16780 1.22989 1.74953 1.10281 1.24383 1.12088 1.23884 0.80265 0.92828 0.90130 1.44658 1.00381 1.60071 1.25272 1.19350 0.73495 0.97235 0.94898 1.21162 0.90482 1.38794 1.08148 0.91549 1.24921 0.98573 0.94786 0.95491 1.69976 1.18610 1.39931 1.23317 0.86286 0.81204 0.78682 0.80314 1.19578 1.20655 1.20649 1.84691 1.16489 1.65831 1.47032 0.92437 0.92073 0.92313 0.91658 0.90469 0.91049 0.92003 0.92026 0.91010 0.91160 0.92344 0.75677 0.94900 0.94908 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.21 37.16 0.34 -0.84 16 2 C -0.11 -1.20 4.97 -26.74 -0.13 -1.34 16 3 C 0.05 0.62 0.77 -155.66 -0.12 0.50 16 4 C -0.15 -1.50 7.70 37.16 0.29 -1.21 16 5 C -0.14 -1.49 8.10 37.16 0.30 -1.18 16 6 C 0.11 1.86 6.57 -13.02 -0.09 1.78 16 7 N -0.26 -5.25 12.20 32.59 0.40 -4.85 16 8 N -0.36 -8.34 11.90 29.86 0.36 -7.99 16 9 C 0.43 9.33 9.17 -86.88 -0.80 8.53 16 10 N -0.66 -14.34 5.69 -63.35 -0.36 -14.70 16 11 C 0.27 6.95 5.76 -5.20 -0.03 6.92 16 12 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 13 H 0.07 1.66 7.60 -52.49 -0.40 1.26 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.88 -25.33 13.29 55.43 0.74 -24.60 16 16 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 O -0.26 -4.90 10.35 3.70 0.04 -4.86 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 23 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.41 7.79 8.44 -40.82 -0.34 7.45 16 33 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 294.62 15.07 4.44 4.44 Total: -1.00 -30.30 294.62 -5.08 -35.39 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.02 Total: 1.70 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.65 Total: 0.01 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 1.13 Total: -52.13 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: 0.04 Total: -4.86 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.30 -5.08 -35.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882274425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.762 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds