Wall clock time and date at job start Sun Mar 29 2020 22:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.86516 * 2 1 4 4 C 1.51501 * 109.82734 * 239.08799 * 2 1 3 5 5 O 1.20765 * 121.01650 * 106.64495 * 4 2 1 6 6 C 1.51315 * 117.95642 * 286.62422 * 4 2 1 7 7 C 1.53231 * 108.65153 * 307.40410 * 6 4 2 8 8 C 1.52614 * 109.50144 * 56.05615 * 7 6 4 9 9 N 1.46881 * 109.53225 * 301.85150 * 8 7 6 10 10 C 1.34774 * 120.71240 * 237.05578 * 9 8 7 11 11 O 1.21287 * 119.99276 * 179.72297 * 10 9 8 12 12 C 1.50700 * 120.00381 * 359.72516 * 10 9 8 13 13 C 1.53004 * 109.46963 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.46637 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 H 1.09000 * 109.47257 * 299.09092 * 1 2 3 23 23 H 1.09002 * 109.46791 * 59.09305 * 1 2 3 24 24 H 1.08999 * 109.46997 * 179.08749 * 1 2 3 25 25 H 1.09002 * 109.60841 * 67.15597 * 6 4 2 26 26 H 1.09005 * 109.60488 * 187.65684 * 6 4 2 27 27 H 1.09005 * 109.47469 * 176.16853 * 7 6 4 28 28 H 1.08997 * 109.47942 * 296.19070 * 7 6 4 29 29 H 1.09004 * 109.40226 * 181.81805 * 8 7 6 30 30 H 1.08999 * 109.34894 * 61.85641 * 8 7 6 31 31 H 1.09000 * 109.46859 * 60.00097 * 12 10 9 32 32 H 1.08997 * 109.46878 * 299.99564 * 12 10 9 33 33 H 1.08992 * 109.47421 * 60.00048 * 13 12 10 34 34 H 1.08997 * 109.46955 * 299.99502 * 13 12 10 35 35 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0440 -0.7322 -1.2228 5 8 2.5339 -0.1305 -2.1481 6 6 1.9248 -2.2404 -1.2486 7 6 2.5504 -2.8034 0.0319 8 6 1.8787 -2.1711 1.2477 9 7 2.0293 -0.7113 1.1881 10 6 2.6170 -0.0382 2.1971 11 8 2.7391 1.1668 2.1320 12 6 3.1223 -0.7827 3.4060 13 6 3.7398 0.2089 4.3942 14 6 4.2457 -0.5357 5.6028 15 1 4.1417 -1.6093 5.6583 16 6 4.8470 0.1530 6.6349 17 7 4.9785 1.4596 6.5649 18 14 5.4735 -0.7699 8.1334 19 1 6.8850 -1.1741 7.9113 20 1 5.3924 0.1104 9.3265 21 1 4.6409 -1.9797 8.3535 22 1 -0.3634 0.4996 0.8980 23 1 -0.3633 0.5279 -0.8818 24 1 -0.3633 -1.0275 -0.0164 25 1 0.8734 -2.5235 -1.2972 26 1 2.4527 -2.6341 -2.1173 27 1 2.4114 -3.8842 0.0594 28 1 3.6156 -2.5733 0.0476 29 1 2.3466 -2.5484 2.1570 30 1 0.8194 -2.4279 1.2493 31 1 3.8768 -1.5065 3.0977 32 1 2.2931 -1.3035 3.8847 33 1 2.9851 0.9324 4.7024 34 1 4.5689 0.7301 3.9157 35 1 5.4012 1.9441 7.2912 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885056824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:16 Heat of formation + Delta-G solvation = -86.926503 kcal Electronic energy + Delta-G solvation = -17270.934714 eV Core-core repulsion = 14461.536857 eV Total energy + Delta-G solvation = -2809.397858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59315 -38.82854 -36.50458 -33.62075 -32.95827 -31.94805 -30.49216 -27.30124 -25.91648 -24.08599 -22.86714 -21.71805 -19.43998 -18.26565 -17.26342 -16.35561 -16.10047 -15.52132 -15.21283 -15.01694 -14.61154 -14.43206 -13.78799 -13.60253 -13.27680 -12.78810 -12.43044 -12.35950 -12.22625 -12.04583 -11.62076 -11.44515 -11.29453 -11.06136 -10.94648 -10.60526 -9.99893 -9.85642 -9.65272 -9.22628 -9.04632 -8.52963 -8.33522 -5.97723 -4.02508 1.67694 3.08170 3.11044 3.32220 3.38539 3.40723 3.80465 4.43619 4.47694 4.57470 4.61997 4.96553 5.09236 5.15044 5.22947 5.25512 5.33930 5.37340 5.50970 5.55086 5.69157 5.81249 5.89171 6.02254 6.13875 6.15309 6.50602 6.82225 7.24663 7.60345 7.72002 7.82960 8.04703 8.35050 8.62931 9.05694 9.61221 11.13232 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042081 B = 0.005177 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.216536 B = 5407.115636 C = 5693.985127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 H 0.120 0.880 4 C 0.359 3.641 5 O -0.449 6.449 6 C -0.169 4.169 7 C -0.131 4.131 8 C 0.101 3.899 9 N -0.619 5.619 10 C 0.515 3.485 11 O -0.527 6.527 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.465 -10.691 -13.342 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 H 0.137 0.863 4 C 0.232 3.768 5 O -0.320 6.320 6 C -0.207 4.207 7 C -0.169 4.169 8 C -0.022 4.022 9 N -0.358 5.358 10 C 0.305 3.695 11 O -0.401 6.401 12 C -0.166 4.166 13 C -0.002 4.002 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.048 -9.525 -13.755 19.020 hybrid contribution 0.314 -0.571 0.831 1.056 sum -8.734 -10.096 -12.923 18.580 Atomic orbital electron populations 1.22009 0.92839 1.02774 1.03509 1.21861 0.95921 0.99154 0.84382 0.86255 1.25245 0.73113 0.92085 0.86343 1.90420 1.32749 1.71651 1.37153 1.22312 1.03764 0.94039 1.00556 1.21850 1.01181 1.00961 0.92908 1.21661 1.01186 0.79748 0.99564 1.48465 1.61399 1.07270 1.18645 1.21715 0.75681 0.88293 0.83777 1.90681 1.55280 1.14847 1.79302 1.21904 1.00922 1.00820 0.92967 1.18925 0.96314 0.93234 0.91706 1.21195 1.38958 0.93608 1.02831 0.92582 1.25027 0.96003 0.94818 0.98495 1.69997 1.43489 1.06547 1.32733 0.86589 0.79203 0.79638 0.82500 1.20673 1.21215 1.19869 0.90652 0.91290 0.91774 0.88153 0.89214 0.89239 0.90744 0.88060 0.90988 0.90099 0.89992 0.95750 0.95825 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.31 37.16 0.35 -1.18 16 2 C 0.09 1.21 3.18 -68.30 -0.22 1.00 16 3 H 0.12 1.94 7.10 -51.93 -0.37 1.57 16 4 C 0.36 4.48 6.18 -28.34 -0.18 4.31 16 5 O -0.45 -7.14 17.90 6.00 0.11 -7.03 16 6 C -0.17 -1.41 6.01 -27.46 -0.17 -1.58 16 7 C -0.13 -1.05 6.07 -26.81 -0.16 -1.22 16 8 C 0.10 0.98 5.97 -4.03 -0.02 0.96 16 9 N -0.62 -8.73 2.67 -166.37 -0.44 -9.18 16 10 C 0.51 9.83 7.70 -10.99 -0.08 9.75 16 11 O -0.53 -12.44 15.45 5.55 0.09 -12.36 16 12 C -0.13 -2.48 3.98 -27.88 -0.11 -2.59 16 13 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 14 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.49 7.11 -51.93 -0.37 0.12 16 25 H 0.10 0.60 7.87 -51.93 -0.41 0.19 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.98 5.90 -51.93 -0.31 0.67 16 30 H 0.07 0.54 7.53 -51.93 -0.39 0.15 16 31 H 0.08 1.44 7.75 -51.93 -0.40 1.04 16 32 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -34.90 291.51 -6.42 -41.31 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -5.15 Total: -3.79 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.12 Total: -3.18 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.29 Total: -35.73 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.19 Total: -19.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.90 -6.42 -41.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885056824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.613 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds