Wall clock time and date at job start Sun Mar 29 2020 22:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.86516 * 2 1 4 4 C 1.51501 * 109.82734 * 239.08799 * 2 1 3 5 5 O 1.20765 * 121.01650 * 106.64495 * 4 2 1 6 6 C 1.51315 * 117.95642 * 286.62422 * 4 2 1 7 7 C 1.53231 * 108.65153 * 307.40410 * 6 4 2 8 8 C 1.52614 * 109.50144 * 56.05615 * 7 6 4 9 9 N 1.46881 * 109.53225 * 301.85150 * 8 7 6 10 10 C 1.34774 * 120.71240 * 237.05578 * 9 8 7 11 11 O 1.21287 * 119.99276 * 179.72297 * 10 9 8 12 12 C 1.50700 * 120.00381 * 359.72516 * 10 9 8 13 13 C 1.53004 * 109.46963 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.46637 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00546 * 0.27598 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00256 * 18 16 14 20 20 H 1.48496 * 109.47029 * 210.00273 * 18 16 14 21 21 H 1.48499 * 109.47352 * 330.00102 * 18 16 14 22 22 H 1.09000 * 109.47257 * 299.09092 * 1 2 3 23 23 H 1.09002 * 109.46791 * 59.09305 * 1 2 3 24 24 H 1.08999 * 109.46997 * 179.08749 * 1 2 3 25 25 H 1.09002 * 109.60841 * 67.15597 * 6 4 2 26 26 H 1.09005 * 109.60488 * 187.65684 * 6 4 2 27 27 H 1.09005 * 109.47469 * 176.16853 * 7 6 4 28 28 H 1.08997 * 109.47942 * 296.19070 * 7 6 4 29 29 H 1.09004 * 109.40226 * 181.81805 * 8 7 6 30 30 H 1.08999 * 109.34894 * 61.85641 * 8 7 6 31 31 H 1.09000 * 109.46859 * 60.00097 * 12 10 9 32 32 H 1.08997 * 109.46878 * 299.99564 * 12 10 9 33 33 H 1.08992 * 109.47421 * 60.00048 * 13 12 10 34 34 H 1.08997 * 109.46955 * 299.99502 * 13 12 10 35 35 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0440 -0.7322 -1.2228 5 8 2.5339 -0.1305 -2.1481 6 6 1.9248 -2.2404 -1.2486 7 6 2.5504 -2.8034 0.0319 8 6 1.8787 -2.1711 1.2477 9 7 2.0293 -0.7113 1.1881 10 6 2.6170 -0.0382 2.1971 11 8 2.7391 1.1668 2.1320 12 6 3.1223 -0.7827 3.4060 13 6 3.7398 0.2089 4.3942 14 6 4.2457 -0.5357 5.6028 15 1 4.1417 -1.6093 5.6583 16 6 4.8470 0.1530 6.6349 17 7 4.9785 1.4596 6.5649 18 14 5.4735 -0.7699 8.1334 19 1 6.8850 -1.1741 7.9113 20 1 5.3924 0.1104 9.3265 21 1 4.6409 -1.9797 8.3535 22 1 -0.3634 0.4996 0.8980 23 1 -0.3633 0.5279 -0.8818 24 1 -0.3633 -1.0275 -0.0164 25 1 0.8734 -2.5235 -1.2972 26 1 2.4527 -2.6341 -2.1173 27 1 2.4114 -3.8842 0.0594 28 1 3.6156 -2.5733 0.0476 29 1 2.3466 -2.5484 2.1570 30 1 0.8194 -2.4279 1.2493 31 1 3.8768 -1.5065 3.0977 32 1 2.2931 -1.3035 3.8847 33 1 2.9851 0.9324 4.7024 34 1 4.5689 0.7301 3.9157 35 1 5.4012 1.9441 7.2912 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885056824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:16 Heat of formation + Delta-G solvation = -111.341888 kcal Electronic energy + Delta-G solvation = -17271.993445 eV Core-core repulsion = 14461.536857 eV Total energy + Delta-G solvation = -2810.456588 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.72674 -40.15776 -37.69743 -35.62254 -33.87985 -33.46439 -32.07339 -28.17720 -27.77638 -25.29465 -23.75459 -23.45420 -20.78824 -19.30964 -18.89025 -17.87017 -17.46036 -16.71931 -16.47878 -16.30448 -16.13255 -15.78029 -15.02210 -14.67693 -14.47467 -14.21388 -13.86243 -13.56474 -13.29850 -13.24496 -12.99186 -12.80933 -12.53711 -12.46198 -12.14135 -12.03448 -11.93183 -11.53083 -11.29983 -10.92613 -10.64839 -10.56201 -9.65138 -8.17101 -6.31501 0.67923 1.43736 1.46578 1.57464 1.62054 1.93472 2.44238 2.87241 3.16382 3.52297 3.83948 3.90410 3.97959 4.08332 4.29535 4.39971 4.44884 4.48900 4.53445 4.68941 4.71606 4.86879 4.94746 4.99646 5.11806 5.16302 5.30177 5.44300 5.51960 5.61650 5.85261 6.17085 6.24344 6.34911 6.87252 7.18613 7.39241 8.95854 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.042081 B = 0.005177 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.216536 B = 5407.115636 C = 5693.985127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.073 0.927 4 C 0.361 3.639 5 O -0.493 6.493 6 C -0.158 4.158 7 C -0.124 4.124 8 C 0.087 3.913 9 N -0.606 5.606 10 C 0.510 3.490 11 O -0.591 6.591 12 C -0.111 4.111 13 C 0.040 3.960 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.009 4.009 17 N -0.941 5.941 18 Si 0.975 3.025 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.251 1.251 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.141 0.859 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.113 0.887 33 H -0.019 1.019 34 H -0.023 1.023 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 -15.149 -13.442 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.091 0.909 4 C 0.237 3.763 5 O -0.367 6.367 6 C -0.196 4.196 7 C -0.162 4.162 8 C -0.033 4.033 9 N -0.342 5.342 10 C 0.301 3.699 11 O -0.471 6.471 12 C -0.151 4.151 13 C 0.002 3.998 14 C -0.578 4.578 15 H 0.099 0.901 16 C -0.206 4.206 17 N -0.581 5.581 18 Si 0.799 3.201 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.175 1.175 22 H 0.079 0.921 23 H 0.098 0.902 24 H 0.120 0.880 25 H 0.158 0.842 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.000 1.000 34 H -0.005 1.005 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.430 -14.069 -13.887 22.352 hybrid contribution 0.701 0.832 0.795 1.347 sum -9.729 -13.238 -13.093 21.007 Atomic orbital electron populations 1.21982 0.89710 1.05178 1.03374 1.21995 0.98335 0.97200 0.84793 0.90880 1.25757 0.71334 0.94365 0.84804 1.90414 1.34738 1.73029 1.38558 1.22377 1.06456 0.89559 1.01169 1.21881 0.99607 1.03238 0.91512 1.22179 1.04043 0.76251 1.00865 1.48400 1.59209 1.09359 1.17189 1.21609 0.75934 0.87491 0.84874 1.90660 1.58189 1.17518 1.80741 1.21652 1.02248 0.99242 0.91939 1.18720 0.93923 0.93819 0.93308 1.21711 1.38300 0.94813 1.02935 0.90116 1.26173 0.96238 0.95641 1.02528 1.70194 1.44862 1.08931 1.34083 0.85300 0.78887 0.78557 0.77370 1.19850 1.21429 1.17461 0.92063 0.90208 0.88003 0.84172 0.88299 0.84863 0.92827 0.87539 0.87108 0.87565 0.86921 1.00014 1.00497 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.31 71.98 0.67 -1.94 16 2 C 0.08 2.16 3.18 44.37 0.14 2.30 16 3 H 0.07 2.61 7.10 -2.39 -0.02 2.60 16 4 C 0.36 8.57 6.18 29.55 0.18 8.75 16 5 O -0.49 -15.90 17.90 -1.46 -0.03 -15.93 16 6 C -0.16 -1.95 6.01 30.12 0.18 -1.77 16 7 C -0.12 -1.41 6.07 30.54 0.19 -1.22 16 8 C 0.09 1.31 5.97 86.18 0.51 1.82 16 9 N -0.61 -16.43 2.67 -798.66 -2.13 -18.56 16 10 C 0.51 20.06 7.70 87.66 0.68 20.73 16 11 O -0.59 -30.26 15.45 -3.05 -0.05 -30.30 16 12 C -0.11 -4.34 3.98 29.85 0.12 -4.22 16 13 C 0.04 2.22 4.26 29.85 0.13 2.35 16 14 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 15 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 16 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 17 N -0.94 -60.01 13.29 21.45 0.28 -59.73 16 18 Si 0.98 43.76 29.54 68.60 2.03 45.78 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.10 1.07 7.11 -2.39 -0.02 1.05 16 25 H 0.14 0.72 7.87 -2.39 -0.02 0.70 16 26 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 1.56 5.90 -2.38 -0.01 1.54 16 30 H 0.11 0.93 7.53 -2.39 -0.02 0.91 16 31 H 0.11 3.58 7.75 -2.39 -0.02 3.57 16 32 H 0.11 3.68 7.89 -2.39 -0.02 3.67 16 33 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 34 H -0.02 -1.50 8.10 -2.39 -0.02 -1.52 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.32 291.51 4.67 -79.65 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 1.07 Total: 2.32 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 3.49 Total: -3.24 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.84 Total: -78.29 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -0.07 Total: -46.23 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -84.32 4.67 -79.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885056824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.691 kcal (2) G-P(sol) polarization free energy of solvation -84.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds