Wall clock time and date at job start Sun Mar 29 2020 22:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47659 * 2 1 4 4 C 1.50704 * 109.47042 * 239.99438 * 2 1 3 5 5 H 1.08002 * 120.00265 * 240.00033 * 4 2 1 6 6 C 1.37876 * 119.99877 * 60.00370 * 4 2 1 7 7 N 1.31520 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00063 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46804 * 60.00416 * 8 6 4 10 10 H 1.48501 * 109.47270 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47288 * 299.99911 * 8 6 4 12 12 C 1.50707 * 109.46918 * 119.99972 * 2 1 3 13 13 O 1.21278 * 119.99991 * 96.47085 * 12 2 1 14 14 N 1.34773 * 119.99759 * 276.46184 * 12 2 1 15 15 C 1.46879 * 120.71534 * 175.15131 * 14 12 2 16 16 C 1.53104 * 109.26703 * 122.91295 * 15 14 12 17 17 C 1.53226 * 109.43200 * 58.37227 * 16 15 14 18 18 C 1.51327 * 108.65237 * 303.82340 * 17 16 15 19 19 O 1.20758 * 121.02455 * 232.57491 * 18 17 16 20 20 C 1.47202 * 120.71546 * 355.16139 * 14 12 2 21 21 H 1.08999 * 109.82820 * 348.02118 * 20 14 12 22 22 C 1.52997 * 109.82896 * 108.96239 * 20 14 12 23 23 H 1.09001 * 109.47700 * 185.03178 * 1 2 3 24 24 H 1.08999 * 109.47101 * 305.02993 * 1 2 3 25 25 H 1.09002 * 109.46992 * 65.02947 * 1 2 3 26 26 H 0.96998 * 119.99756 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.50094 * 2.97842 * 15 14 12 28 28 H 1.08993 * 109.54008 * 242.86952 * 15 14 12 29 29 H 1.09002 * 109.47891 * 298.38442 * 16 15 14 30 30 H 1.09000 * 109.48389 * 178.36574 * 16 15 14 31 31 H 1.09001 * 109.61033 * 184.07610 * 17 16 15 32 32 H 1.08998 * 109.60616 * 63.57040 * 17 16 15 33 33 H 1.08999 * 109.47192 * 178.18126 * 22 20 14 34 34 H 1.09001 * 109.47094 * 298.17905 * 22 20 14 35 35 H 1.08997 * 109.47318 * 58.17721 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8278 -2.5201 -4.0080 10 1 1.8269 -0.4203 -5.2204 11 1 3.8074 -1.1193 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.3460 -1.8804 1.1697 14 7 2.1330 -0.0456 2.3985 15 6 2.5190 -0.7468 3.6300 16 6 3.7651 -0.0816 4.2207 17 6 3.4697 1.3955 4.5018 18 6 3.0025 2.0482 3.2190 19 8 3.5253 3.0558 2.8070 20 6 1.8583 1.3989 2.4675 21 1 1.7957 1.8119 1.4607 22 6 0.5441 1.6423 3.2121 23 1 -0.3634 -1.0237 0.0901 24 1 -0.3633 0.5899 0.8415 25 1 -0.3633 0.4338 -0.9316 26 1 0.7088 1.1611 -3.4844 27 1 2.7370 -1.7900 3.4017 28 1 1.7027 -0.6947 4.3503 29 1 4.5892 -0.1589 3.5115 30 1 4.0377 -0.5810 5.1504 31 1 4.3754 1.8890 4.8544 32 1 2.6888 1.4748 5.2580 33 1 0.3627 2.7145 3.2881 34 1 -0.2747 1.1731 2.6668 35 1 0.6080 1.2129 4.2119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885064468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:30 Heat of formation + Delta-G solvation = -78.355355 kcal Electronic energy + Delta-G solvation = -17984.584848 eV Core-core repulsion = 15175.558663 eV Total energy + Delta-G solvation = -2809.026185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32916 -38.54854 -36.08239 -34.00680 -32.93090 -30.77973 -30.32360 -27.16128 -25.20868 -24.10640 -23.15477 -21.60607 -19.66893 -17.97931 -16.75176 -16.29294 -15.77808 -15.26922 -14.96623 -14.74245 -14.49288 -13.98646 -13.54087 -13.35717 -12.78266 -12.64405 -12.32350 -12.18862 -12.05740 -11.49791 -11.37847 -11.12264 -10.99228 -10.90576 -10.70863 -10.61496 -10.29215 -10.00972 -9.64570 -8.99809 -8.64138 -8.32260 -8.17104 -6.04598 -4.08772 1.91926 3.35592 3.38220 3.40770 3.48807 3.58054 4.04772 4.45132 4.70253 4.82786 4.85012 5.22181 5.26232 5.30909 5.37826 5.44128 5.54115 5.68064 5.76030 5.88477 5.96839 6.06837 6.20189 6.22158 6.65140 6.82316 6.91189 6.99381 7.37198 7.45238 7.74645 7.89751 8.05745 8.31658 8.96517 9.10346 9.56187 11.02450 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.007454 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.237396 B = 3755.443384 C = 3933.488060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.048 0.952 4 C -0.502 4.502 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.528 3.472 13 O -0.540 6.540 14 N -0.620 5.620 15 C 0.102 3.898 16 C -0.127 4.127 17 C -0.168 4.168 18 C 0.358 3.642 19 O -0.448 6.448 20 C 0.091 3.909 21 H 0.129 0.871 22 C -0.157 4.157 23 H 0.031 0.969 24 H 0.016 0.984 25 H 0.096 0.904 26 H 0.262 0.738 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 1.966 14.254 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.541 4.541 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.415 6.415 14 N -0.358 5.358 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.206 4.206 18 C 0.232 3.768 19 O -0.319 6.319 20 C -0.015 4.015 21 H 0.146 0.854 22 C -0.215 4.215 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.495 1.965 13.821 13.968 hybrid contribution 0.279 -0.387 -0.681 0.832 sum 0.775 1.579 13.139 13.256 Atomic orbital electron populations 1.21758 0.95975 0.99260 1.02031 1.18931 0.94455 0.96559 0.89150 0.93457 1.21036 1.31339 1.12630 0.89066 0.91250 1.24937 0.95054 0.95037 0.99091 1.69847 1.36790 1.22920 1.23767 0.86502 0.79251 0.79767 0.81618 1.20123 1.21273 1.20212 1.22078 0.74819 0.87257 0.83861 1.90530 1.48938 1.17467 1.84546 1.48490 1.71041 1.07329 1.08959 1.21486 0.95520 0.98419 0.86616 1.21893 0.99343 0.93388 1.01951 1.22308 1.03357 0.97706 0.97259 1.25252 0.82163 0.83098 0.86323 1.90415 1.51908 1.22699 1.66840 1.22113 0.93969 0.82459 1.02909 0.85394 1.22106 0.96413 1.02389 1.00633 0.94997 0.96501 0.88501 0.92781 0.88552 0.91734 0.91008 0.89911 0.89453 0.88336 0.91267 0.90196 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.01 37.16 0.33 -2.73 16 2 C 0.03 0.74 1.92 -92.92 -0.18 0.57 16 3 H 0.05 1.22 6.07 -51.93 -0.32 0.90 16 4 C -0.50 -14.27 8.34 -34.44 -0.29 -14.56 16 5 H 0.07 2.07 7.00 -52.49 -0.37 1.70 16 6 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 7 N -0.89 -25.08 11.29 55.43 0.63 -24.45 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.53 12.00 6.81 -10.98 -0.07 11.93 16 13 O -0.54 -13.83 15.19 5.56 0.08 -13.75 16 14 N -0.62 -10.85 2.66 -166.08 -0.44 -11.29 16 15 C 0.10 1.40 6.08 -3.78 -0.02 1.38 16 16 C -0.13 -1.43 6.09 -26.56 -0.16 -1.59 16 17 C -0.17 -1.82 6.04 -27.46 -0.17 -1.99 16 18 C 0.36 5.32 6.18 -28.33 -0.18 5.14 16 19 O -0.45 -8.06 17.90 6.00 0.11 -7.95 16 20 C 0.09 1.42 2.91 -68.31 -0.20 1.22 16 21 H 0.13 2.34 5.51 -51.93 -0.29 2.05 16 22 C -0.16 -1.91 9.28 37.16 0.34 -1.56 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.32 6.16 -51.93 -0.32 0.00 16 25 H 0.10 2.46 5.95 -51.93 -0.31 2.16 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.10 1.48 6.99 -51.93 -0.36 1.12 16 28 H 0.06 0.72 7.47 -51.93 -0.39 0.33 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 35 H 0.06 0.61 7.12 -51.93 -0.37 0.24 16 LS Contribution 281.41 15.07 4.24 4.24 Total: -1.00 -31.98 281.41 -5.79 -37.77 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.71 Total: -0.79 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.68 Total: -0.62 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.18 Total: -35.74 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.19 Total: -21.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.98 -5.79 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885064468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.586 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds