Wall clock time and date at job start Sun Mar 29 2020 22:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47659 * 2 1 4 4 C 1.50704 * 109.47042 * 239.99438 * 2 1 3 5 5 H 1.08002 * 120.00265 * 240.00033 * 4 2 1 6 6 C 1.37876 * 119.99877 * 60.00370 * 4 2 1 7 7 N 1.31520 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00063 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46804 * 60.00416 * 8 6 4 10 10 H 1.48501 * 109.47270 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47288 * 299.99911 * 8 6 4 12 12 C 1.50707 * 109.46918 * 119.99972 * 2 1 3 13 13 O 1.21278 * 119.99991 * 96.47085 * 12 2 1 14 14 N 1.34773 * 119.99759 * 276.46184 * 12 2 1 15 15 C 1.46879 * 120.71534 * 175.15131 * 14 12 2 16 16 C 1.53104 * 109.26703 * 122.91295 * 15 14 12 17 17 C 1.53226 * 109.43200 * 58.37227 * 16 15 14 18 18 C 1.51327 * 108.65237 * 303.82340 * 17 16 15 19 19 O 1.20758 * 121.02455 * 232.57491 * 18 17 16 20 20 C 1.47202 * 120.71546 * 355.16139 * 14 12 2 21 21 H 1.08999 * 109.82820 * 348.02118 * 20 14 12 22 22 C 1.52997 * 109.82896 * 108.96239 * 20 14 12 23 23 H 1.09001 * 109.47700 * 185.03178 * 1 2 3 24 24 H 1.08999 * 109.47101 * 305.02993 * 1 2 3 25 25 H 1.09002 * 109.46992 * 65.02947 * 1 2 3 26 26 H 0.96998 * 119.99756 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.50094 * 2.97842 * 15 14 12 28 28 H 1.08993 * 109.54008 * 242.86952 * 15 14 12 29 29 H 1.09002 * 109.47891 * 298.38442 * 16 15 14 30 30 H 1.09000 * 109.48389 * 178.36574 * 16 15 14 31 31 H 1.09001 * 109.61033 * 184.07610 * 17 16 15 32 32 H 1.08998 * 109.60616 * 63.57040 * 17 16 15 33 33 H 1.08999 * 109.47192 * 178.18126 * 22 20 14 34 34 H 1.09001 * 109.47094 * 298.17905 * 22 20 14 35 35 H 1.08997 * 109.47318 * 58.17721 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8278 -2.5201 -4.0080 10 1 1.8269 -0.4203 -5.2204 11 1 3.8074 -1.1193 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.3460 -1.8804 1.1697 14 7 2.1330 -0.0456 2.3985 15 6 2.5190 -0.7468 3.6300 16 6 3.7651 -0.0816 4.2207 17 6 3.4697 1.3955 4.5018 18 6 3.0025 2.0482 3.2190 19 8 3.5253 3.0558 2.8070 20 6 1.8583 1.3989 2.4675 21 1 1.7957 1.8119 1.4607 22 6 0.5441 1.6423 3.2121 23 1 -0.3634 -1.0237 0.0901 24 1 -0.3633 0.5899 0.8415 25 1 -0.3633 0.4338 -0.9316 26 1 0.7088 1.1611 -3.4844 27 1 2.7370 -1.7900 3.4017 28 1 1.7027 -0.6947 4.3503 29 1 4.5892 -0.1589 3.5115 30 1 4.0377 -0.5810 5.1504 31 1 4.3754 1.8890 4.8544 32 1 2.6888 1.4748 5.2580 33 1 0.3627 2.7145 3.2881 34 1 -0.2747 1.1731 2.6668 35 1 0.6080 1.2129 4.2119 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885064468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:30 Heat of formation + Delta-G solvation = -99.558398 kcal Electronic energy + Delta-G solvation = -17985.504281 eV Core-core repulsion = 15175.558663 eV Total energy + Delta-G solvation = -2809.945618 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.67736 -40.08334 -37.50477 -35.93970 -34.23237 -32.25578 -32.03301 -28.30097 -27.30359 -25.43462 -24.49180 -23.06424 -21.14985 -19.28343 -18.51207 -17.98675 -17.40502 -16.52349 -16.44189 -16.24335 -15.93323 -15.45220 -15.09465 -14.79213 -14.29949 -13.93574 -13.71365 -13.41689 -13.23322 -13.10323 -12.96965 -12.71384 -12.58358 -12.46666 -12.22420 -12.07444 -12.05481 -11.93145 -11.10924 -10.88107 -10.60418 -10.23820 -9.55375 -8.18448 -6.30264 0.73727 1.38498 1.40253 1.48569 1.82231 2.07453 2.42241 2.92339 3.10355 3.61787 3.77061 3.92299 4.06054 4.12823 4.30430 4.40036 4.65512 4.67193 4.70307 4.75647 4.84234 4.89127 4.97216 4.99286 5.07783 5.18594 5.33469 5.39864 5.60290 5.68870 5.91229 6.12408 6.27868 6.48760 6.75719 7.32652 7.42051 8.86862 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.007454 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.237396 B = 3755.443384 C = 3933.488060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.033 0.967 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.580 6.580 14 N -0.611 5.611 15 C 0.094 3.906 16 C -0.119 4.119 17 C -0.156 4.156 18 C 0.360 3.640 19 O -0.488 6.488 20 C 0.080 3.920 21 H 0.091 0.909 22 C -0.150 4.150 23 H 0.022 0.978 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.266 0.734 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.044 0.956 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 2.213 16.728 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.051 0.949 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.180 4.180 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.317 3.683 13 O -0.459 6.459 14 N -0.346 5.346 15 C -0.027 4.027 16 C -0.157 4.157 17 C -0.194 4.194 18 C 0.236 3.764 19 O -0.362 6.362 20 C -0.024 4.024 21 H 0.109 0.891 22 C -0.208 4.208 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.063 0.937 30 H 0.145 0.855 31 H 0.119 0.881 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.245 2.245 16.342 16.497 hybrid contribution 0.357 -0.419 -1.404 1.508 sum 0.601 1.826 14.938 15.061 Atomic orbital electron populations 1.21556 0.94820 0.99003 1.02250 1.18840 0.95481 0.95573 0.89758 0.94885 1.21221 1.32002 1.12558 0.91245 0.93663 1.25619 0.95135 0.95729 1.01494 1.69935 1.36915 1.23449 1.24506 0.85640 0.78662 0.78798 0.78748 1.20008 1.19741 1.20137 1.21527 0.75073 0.86684 0.84988 1.90499 1.51043 1.18876 1.85469 1.48348 1.69404 1.08109 1.08771 1.21868 0.98250 0.97180 0.85372 1.21880 0.96928 0.93900 1.03043 1.22349 1.05259 0.96408 0.95347 1.25704 0.80869 0.82320 0.87543 1.90413 1.52764 1.24718 1.68274 1.22276 0.96964 0.81016 1.02167 0.89082 1.22092 0.93368 1.03746 1.01576 0.95885 0.92996 0.90871 0.92453 0.90529 0.87622 0.93704 0.85504 0.88100 0.84066 0.89634 0.91220 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 9.01 71.98 0.65 -4.95 16 2 C 0.02 1.27 1.92 -12.28 -0.02 1.24 16 3 H 0.03 1.80 6.07 -2.39 -0.01 1.78 16 4 C -0.53 -31.49 8.34 25.60 0.21 -31.28 16 5 H 0.05 2.84 7.00 -2.91 -0.02 2.81 16 6 C 0.02 1.12 5.29 84.65 0.45 1.57 16 7 N -0.91 -52.01 11.29 21.45 0.24 -51.77 16 8 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 9 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.53 24.54 6.81 87.66 0.60 25.14 16 13 O -0.58 -30.75 15.19 -3.02 -0.05 -30.80 16 14 N -0.61 -20.89 2.66 -797.76 -2.12 -23.01 16 15 C 0.09 2.33 6.08 86.34 0.52 2.85 16 16 C -0.12 -2.24 6.09 30.70 0.19 -2.05 16 17 C -0.16 -2.68 6.04 30.12 0.18 -2.50 16 18 C 0.36 10.01 6.18 29.56 0.18 10.19 16 19 O -0.49 -17.36 17.90 -1.45 -0.03 -17.38 16 20 C 0.08 2.43 2.91 44.37 0.13 2.56 16 21 H 0.09 3.45 5.51 -2.39 -0.01 3.43 16 22 C -0.15 -3.17 9.28 71.98 0.67 -2.50 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 2.02 6.16 -2.39 -0.01 2.00 16 25 H 0.07 3.82 5.95 -2.39 -0.01 3.80 16 26 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.08 2.25 6.99 -2.39 -0.02 2.24 16 28 H 0.11 1.80 7.47 -2.39 -0.02 1.78 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.13 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.14 1.33 7.93 -2.39 -0.02 1.31 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.64 6.35 -2.39 -0.02 1.62 16 35 H 0.10 1.38 7.12 -2.39 -0.02 1.36 16 Total: -1.00 -73.77 281.41 4.92 -68.85 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.09 Total: 6.23 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 3.76 Total: 0.27 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -1.88 Total: -74.78 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.07 Total: -48.18 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.77 4.92 -68.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885064468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.710 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds