Wall clock time and date at job start Sun Mar 29 2020 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47188 * 2 1 4 4 C 1.50707 * 109.47138 * 240.00247 * 2 1 3 5 5 H 1.07994 * 119.99411 * 240.00005 * 4 2 1 6 6 C 1.37875 * 120.00071 * 59.99802 * 4 2 1 7 7 N 1.31517 * 119.99945 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99829 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47361 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47127 * 119.99957 * 8 6 4 11 11 H 1.48499 * 109.47324 * 239.99815 * 8 6 4 12 12 C 1.50697 * 109.47395 * 119.99858 * 2 1 3 13 13 O 1.21287 * 119.99880 * 98.37889 * 12 2 1 14 14 N 1.34771 * 119.99892 * 278.10900 * 12 2 1 15 15 C 1.46868 * 120.71834 * 6.24240 * 14 12 2 16 16 C 1.53102 * 109.26917 * 122.88906 * 15 14 12 17 17 C 1.53232 * 109.43261 * 58.37181 * 16 15 14 18 18 C 1.51322 * 108.64802 * 303.82328 * 17 16 15 19 19 O 1.20761 * 121.02042 * 232.59754 * 18 17 16 20 20 C 1.47201 * 120.71376 * 185.96531 * 14 12 2 21 21 H 1.09003 * 109.83062 * 108.98021 * 20 14 12 22 22 C 1.53004 * 109.82714 * 348.05131 * 20 14 12 23 23 H 1.09000 * 109.47022 * 183.10567 * 1 2 3 24 24 H 1.09001 * 109.46984 * 303.10858 * 1 2 3 25 25 H 1.09002 * 109.47162 * 63.10384 * 1 2 3 26 26 H 0.97002 * 119.99605 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.50779 * 242.82479 * 15 14 12 28 28 H 1.09005 * 109.50312 * 2.94881 * 15 14 12 29 29 H 1.09000 * 109.47593 * 178.35770 * 16 15 14 30 30 H 1.09001 * 109.47702 * 298.37481 * 16 15 14 31 31 H 1.08998 * 109.60345 * 63.57081 * 17 16 15 32 32 H 1.08996 * 109.60416 * 184.07163 * 17 16 15 33 33 H 1.08999 * 109.47607 * 68.87684 * 22 20 14 34 34 H 1.09003 * 109.47271 * 188.88081 * 22 20 14 35 35 H 1.09003 * 109.46700 * 308.87792 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2877 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1873 -4.8166 12 6 2.0324 -0.7103 1.2304 13 8 2.3789 -1.8706 1.1618 14 7 2.1018 -0.0547 2.4059 15 6 1.5665 1.3065 2.5384 16 6 0.5202 1.3313 3.6558 17 6 1.1631 0.8662 4.9667 18 6 1.7653 -0.5050 4.7504 19 8 1.4966 -1.4256 5.4844 20 6 2.7104 -0.6898 3.5862 21 1 3.6657 -0.2150 3.8102 22 6 2.9208 -2.1821 3.3220 23 1 -0.3633 -1.0262 0.0557 24 1 -0.3633 0.5613 0.8608 25 1 -0.3633 0.4649 -0.9165 26 1 0.7089 1.1614 -3.4845 27 1 2.3763 1.9939 2.7829 28 1 1.1031 1.6084 1.5991 29 1 0.1416 2.3463 3.7768 30 1 -0.3028 0.6648 3.3980 31 1 1.9449 1.5671 5.2594 32 1 0.4045 0.8137 5.7476 33 1 3.6992 -2.3118 2.5701 34 1 3.2222 -2.6757 4.2459 35 1 1.9908 -2.6219 2.9617 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885064473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:36 Heat of formation + Delta-G solvation = -65.329829 kcal Electronic energy + Delta-G solvation = -18014.589684 eV Core-core repulsion = 15206.128328 eV Total energy + Delta-G solvation = -2808.461356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44055 -38.59848 -36.00104 -34.08637 -32.70639 -31.48154 -29.64392 -26.99978 -25.21356 -24.47593 -22.42474 -21.83791 -19.67433 -18.16528 -16.43774 -16.38246 -15.74508 -15.66877 -15.01540 -14.69836 -14.46759 -14.08879 -13.39052 -13.07245 -12.82925 -12.49767 -12.31860 -12.02157 -11.68900 -11.46274 -11.33534 -11.17043 -11.01570 -10.86245 -10.64878 -10.55954 -10.31315 -10.00531 -9.71039 -9.02291 -8.48588 -8.13427 -8.04880 -6.07905 -4.11219 1.89003 3.29657 3.37442 3.42451 3.50864 3.58822 4.04060 4.43193 4.73378 4.85467 4.88458 5.24108 5.25760 5.32050 5.45575 5.53831 5.66237 5.78219 5.93650 6.05361 6.13069 6.14590 6.40968 6.57314 6.68624 6.79721 6.92185 7.02546 7.35523 7.48402 7.72010 7.90932 8.03990 8.30923 8.95705 9.13607 9.54162 10.99417 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039360 B = 0.007165 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.214865 B = 3906.691311 C = 4390.137104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.049 0.951 4 C -0.499 4.499 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.525 3.475 13 O -0.531 6.531 14 N -0.621 5.621 15 C 0.101 3.899 16 C -0.129 4.129 17 C -0.169 4.169 18 C 0.353 3.647 19 O -0.450 6.450 20 C 0.097 3.903 21 H 0.092 0.908 22 C -0.126 4.126 23 H 0.031 0.969 24 H 0.015 0.985 25 H 0.096 0.904 26 H 0.261 0.739 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 4.782 11.639 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.406 6.406 14 N -0.360 5.360 15 C -0.022 4.022 16 C -0.168 4.168 17 C -0.207 4.207 18 C 0.227 3.773 19 O -0.321 6.321 20 C -0.007 4.007 21 H 0.110 0.890 22 C -0.183 4.183 23 H 0.050 0.950 24 H 0.034 0.966 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.438 3.733 11.832 12.414 hybrid contribution 0.262 -0.120 -0.746 0.800 sum 0.700 3.612 11.086 11.681 Atomic orbital electron populations 1.21786 0.96252 0.99622 1.01576 1.18922 0.94250 0.96687 0.89028 0.93316 1.21139 1.31072 1.12568 0.88990 0.91039 1.24930 0.95085 0.95048 0.99095 1.69865 1.37052 1.23054 1.23519 0.86404 0.78668 0.79767 0.82467 1.19580 1.20990 1.21037 1.22084 0.75518 0.87058 0.83644 1.90590 1.47970 1.17329 1.84747 1.48474 1.61897 1.16150 1.09501 1.21811 0.96309 0.83399 1.00705 1.21936 0.99023 1.02632 0.93195 1.22325 1.02044 0.96371 0.99963 1.25329 0.78970 0.89509 0.83504 1.90375 1.53235 1.44209 1.44316 1.21776 0.95832 0.97488 0.85638 0.89008 1.22013 1.04872 0.91238 1.00210 0.94968 0.96646 0.88556 0.92945 0.91479 0.87327 0.89520 0.90903 0.88345 0.89486 0.90114 0.93813 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.73 37.16 0.32 -2.71 16 2 C 0.03 0.77 1.77 -92.92 -0.16 0.61 16 3 H 0.05 1.17 6.94 -51.92 -0.36 0.81 16 4 C -0.50 -13.77 8.34 -34.44 -0.29 -14.06 16 5 H 0.07 2.09 6.96 -52.49 -0.37 1.72 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.40 11.30 55.43 0.63 -23.78 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.62 6.72 -10.99 -0.07 11.54 16 13 O -0.53 -13.18 11.30 5.55 0.06 -13.12 16 14 N -0.62 -10.76 2.98 -166.31 -0.50 -11.25 16 15 C 0.10 1.36 5.73 -3.79 -0.02 1.34 16 16 C -0.13 -1.42 6.09 -26.56 -0.16 -1.58 16 17 C -0.17 -1.79 6.14 -27.46 -0.17 -1.96 16 18 C 0.35 5.13 6.68 -28.54 -0.19 4.94 16 19 O -0.45 -7.79 16.75 6.00 0.10 -7.69 16 20 C 0.10 1.52 3.73 -68.51 -0.26 1.26 16 21 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 22 C -0.13 -2.26 7.22 37.16 0.27 -1.99 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.01 0.28 6.68 -51.93 -0.35 -0.07 16 25 H 0.10 2.39 5.99 -51.93 -0.31 2.07 16 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.11 1.62 4.61 -51.93 -0.24 1.38 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.55 6.80 -51.93 -0.35 1.19 16 34 H 0.04 0.71 7.74 -51.93 -0.40 0.30 16 35 H 0.07 1.50 6.80 -51.93 -0.35 1.15 16 LS Contribution 277.48 15.07 4.18 4.18 Total: -1.00 -30.81 277.48 -6.20 -37.01 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.83 Total: -0.62 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.83 Total: -1.12 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.13 Total: -35.03 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.16 Total: -20.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.81 -6.20 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885064473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.319 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds