Wall clock time and date at job start Sun Mar 29 2020 22:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47188 * 2 1 4 4 C 1.50707 * 109.47138 * 240.00247 * 2 1 3 5 5 H 1.07994 * 119.99411 * 240.00005 * 4 2 1 6 6 C 1.37875 * 120.00071 * 59.99802 * 4 2 1 7 7 N 1.31517 * 119.99945 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99829 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47361 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47127 * 119.99957 * 8 6 4 11 11 H 1.48499 * 109.47324 * 239.99815 * 8 6 4 12 12 C 1.50697 * 109.47395 * 119.99858 * 2 1 3 13 13 O 1.21287 * 119.99880 * 98.37889 * 12 2 1 14 14 N 1.34771 * 119.99892 * 278.10900 * 12 2 1 15 15 C 1.46868 * 120.71834 * 6.24240 * 14 12 2 16 16 C 1.53102 * 109.26917 * 122.88906 * 15 14 12 17 17 C 1.53232 * 109.43261 * 58.37181 * 16 15 14 18 18 C 1.51322 * 108.64802 * 303.82328 * 17 16 15 19 19 O 1.20761 * 121.02042 * 232.59754 * 18 17 16 20 20 C 1.47201 * 120.71376 * 185.96531 * 14 12 2 21 21 H 1.09003 * 109.83062 * 108.98021 * 20 14 12 22 22 C 1.53004 * 109.82714 * 348.05131 * 20 14 12 23 23 H 1.09000 * 109.47022 * 183.10567 * 1 2 3 24 24 H 1.09001 * 109.46984 * 303.10858 * 1 2 3 25 25 H 1.09002 * 109.47162 * 63.10384 * 1 2 3 26 26 H 0.97002 * 119.99605 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.50779 * 242.82479 * 15 14 12 28 28 H 1.09005 * 109.50312 * 2.94881 * 15 14 12 29 29 H 1.09000 * 109.47593 * 178.35770 * 16 15 14 30 30 H 1.09001 * 109.47702 * 298.37481 * 16 15 14 31 31 H 1.08998 * 109.60345 * 63.57081 * 17 16 15 32 32 H 1.08996 * 109.60416 * 184.07163 * 17 16 15 33 33 H 1.08999 * 109.47607 * 68.87684 * 22 20 14 34 34 H 1.09003 * 109.47271 * 188.88081 * 22 20 14 35 35 H 1.09003 * 109.46700 * 308.87792 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2877 -3.6038 10 1 1.1661 -1.5866 -4.8161 11 1 3.1466 -0.1873 -4.8166 12 6 2.0324 -0.7103 1.2304 13 8 2.3789 -1.8706 1.1618 14 7 2.1018 -0.0547 2.4059 15 6 1.5665 1.3065 2.5384 16 6 0.5202 1.3313 3.6558 17 6 1.1631 0.8662 4.9667 18 6 1.7653 -0.5050 4.7504 19 8 1.4966 -1.4256 5.4844 20 6 2.7104 -0.6898 3.5862 21 1 3.6657 -0.2150 3.8102 22 6 2.9208 -2.1821 3.3220 23 1 -0.3633 -1.0262 0.0557 24 1 -0.3633 0.5613 0.8608 25 1 -0.3633 0.4649 -0.9165 26 1 0.7089 1.1614 -3.4845 27 1 2.3763 1.9939 2.7829 28 1 1.1031 1.6084 1.5991 29 1 0.1416 2.3463 3.7768 30 1 -0.3028 0.6648 3.3980 31 1 1.9449 1.5671 5.2594 32 1 0.4045 0.8137 5.7476 33 1 3.6992 -2.3118 2.5701 34 1 3.2222 -2.6757 4.2459 35 1 1.9908 -2.6219 2.9617 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885064473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:35 Heat of formation + Delta-G solvation = -85.168789 kcal Electronic energy + Delta-G solvation = -18015.449966 eV Core-core repulsion = 15206.128328 eV Total energy + Delta-G solvation = -2809.321638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78692 -40.05120 -37.34183 -35.98558 -33.95068 -33.16112 -31.27790 -28.17279 -27.23028 -25.87209 -24.07924 -22.97725 -21.05007 -19.56390 -18.34106 -17.84013 -17.22160 -16.99588 -16.44077 -16.28030 -15.72268 -15.49888 -14.97379 -14.63893 -14.23434 -13.95959 -13.71427 -13.34265 -13.30569 -12.93574 -12.91035 -12.65696 -12.57317 -12.43446 -12.23120 -12.11411 -12.01607 -11.86993 -11.05509 -10.87735 -10.52228 -9.82132 -9.44268 -8.15303 -6.24954 0.75007 1.39012 1.42022 1.54158 1.89263 2.11533 2.45777 2.94118 3.14420 3.60739 3.88540 3.98552 4.06634 4.25285 4.28729 4.43846 4.60239 4.70041 4.71569 4.81344 4.90660 4.94637 4.97554 5.04123 5.10377 5.26115 5.28508 5.45636 5.63598 5.73807 5.94218 6.18947 6.36108 6.56282 6.81546 7.39634 7.49916 8.90325 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039360 B = 0.007165 C = 0.006376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.214865 B = 3906.691311 C = 4390.137104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 H 0.050 0.950 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.951 3.049 9 H -0.282 1.282 10 H -0.277 1.277 11 H -0.271 1.271 12 C 0.521 3.479 13 O -0.572 6.572 14 N -0.614 5.614 15 C 0.090 3.910 16 C -0.122 4.122 17 C -0.157 4.157 18 C 0.356 3.644 19 O -0.484 6.484 20 C 0.089 3.911 21 H 0.127 0.873 22 C -0.119 4.119 23 H 0.012 0.988 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.265 0.735 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.052 0.948 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 7.033 13.004 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 H 0.067 0.933 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.207 1.207 10 H -0.202 1.202 11 H -0.197 1.197 12 C 0.312 3.688 13 O -0.451 6.451 14 N -0.351 5.351 15 C -0.031 4.031 16 C -0.160 4.160 17 C -0.194 4.194 18 C 0.232 3.768 19 O -0.358 6.358 20 C -0.014 4.014 21 H 0.144 0.856 22 C -0.176 4.176 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.146 0.854 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.386 6.044 13.222 14.543 hybrid contribution 0.293 -0.802 -1.141 1.426 sum 0.679 5.241 12.081 13.186 Atomic orbital electron populations 1.21600 0.95475 0.98697 1.02137 1.18811 0.94849 0.96268 0.89020 0.93258 1.21280 1.31658 1.12401 0.91238 0.93856 1.25514 0.95209 0.95724 1.01168 1.69923 1.37044 1.23404 1.24281 0.85604 0.78321 0.78629 0.79685 1.20711 1.20237 1.19672 1.21719 0.75664 0.86565 0.84841 1.90585 1.49908 1.18895 1.85677 1.48354 1.60925 1.17358 1.08449 1.22173 0.98232 0.81502 1.01227 1.21929 0.97389 1.04571 0.92114 1.22349 1.03232 0.93845 1.00005 1.25682 0.77886 0.91086 0.82125 1.90379 1.54146 1.45791 1.45445 1.21997 0.97981 0.95867 0.85583 0.85606 1.21800 1.02331 0.93513 0.99939 0.96875 0.92921 0.90621 0.92521 0.87892 0.88932 0.85423 0.92931 0.84468 0.88119 0.92150 0.92392 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.73 71.98 0.63 -4.88 16 2 C 0.03 1.54 1.77 -12.28 -0.02 1.51 16 3 H 0.05 2.37 6.94 -2.38 -0.02 2.35 16 4 C -0.53 -29.98 8.34 25.60 0.21 -29.76 16 5 H 0.04 2.65 6.96 -2.91 -0.02 2.63 16 6 C 0.02 1.28 5.30 84.65 0.45 1.72 16 7 N -0.91 -49.40 11.30 21.45 0.24 -49.16 16 8 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 9 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.52 23.45 6.72 87.66 0.59 24.04 16 13 O -0.57 -29.75 11.30 -3.05 -0.03 -29.79 16 14 N -0.61 -20.44 2.98 -798.49 -2.38 -22.82 16 15 C 0.09 2.12 5.73 86.34 0.50 2.61 16 16 C -0.12 -2.14 6.09 30.71 0.19 -1.95 16 17 C -0.16 -2.56 6.14 30.12 0.19 -2.38 16 18 C 0.36 9.42 6.68 29.42 0.20 9.61 16 19 O -0.48 -16.07 16.75 -1.45 -0.02 -16.09 16 20 C 0.09 2.65 3.73 44.24 0.17 2.81 16 21 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 22 C -0.12 -4.33 7.22 71.98 0.52 -3.81 16 23 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.05 1.94 6.68 -2.39 -0.02 1.92 16 25 H 0.08 3.77 5.99 -2.39 -0.01 3.75 16 26 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.09 2.53 4.61 -2.38 -0.01 2.52 16 29 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.41 6.80 -2.39 -0.02 2.40 16 34 H 0.06 1.89 7.74 -2.39 -0.02 1.87 16 35 H 0.04 1.61 6.80 -2.39 -0.02 1.60 16 Total: -1.00 -70.06 277.48 4.52 -65.54 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.09 Total: 6.43 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 3.61 Total: -0.46 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -2.14 Total: -71.98 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.06 Total: -45.88 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.06 4.52 -65.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885064473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.625 kcal (2) G-P(sol) polarization free energy of solvation -70.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds