Wall clock time and date at job start Sun Mar 29 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20766 * 120.00070 * 2 1 4 4 C 1.50704 * 119.99791 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.46949 * 34.99808 * 4 2 1 6 6 C 1.52998 * 109.46927 * 155.00014 * 4 2 1 7 7 C 1.53001 * 109.46918 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.46772 * 299.99487 * 7 6 4 9 9 H 1.08995 * 109.47113 * 300.00037 * 8 7 6 10 10 N 1.46505 * 109.46742 * 180.02562 * 8 7 6 11 11 C 1.34780 * 119.99680 * 155.00112 * 10 8 7 12 12 O 1.21687 * 119.99961 * 0.02562 * 11 10 8 13 13 C 1.46373 * 119.99746 * 179.97438 * 11 10 8 14 14 H 1.07996 * 120.00152 * 6.25404 * 13 11 10 15 15 C 1.40045 * 119.99626 * 186.24684 * 13 11 10 16 16 N 1.30678 * 119.99940 * 184.67774 * 15 13 11 17 17 Si 1.86805 * 120.00417 * 4.67616 * 15 13 11 18 18 H 1.48500 * 109.47185 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.46787 * 60.00193 * 17 15 13 20 20 H 1.48502 * 109.46779 * 300.00210 * 17 15 13 21 21 C 1.52998 * 109.46980 * 60.00551 * 8 7 6 22 22 C 1.53001 * 109.46918 * 299.99359 * 21 8 7 23 23 H 1.08997 * 109.47283 * 269.99652 * 1 2 3 24 24 H 1.09003 * 109.46961 * 29.99653 * 1 2 3 25 25 H 1.08996 * 109.47532 * 149.99573 * 1 2 3 26 26 H 1.08995 * 109.47617 * 59.99680 * 6 4 2 27 27 H 1.09007 * 109.47002 * 299.99529 * 6 4 2 28 28 H 1.09005 * 109.46949 * 179.97438 * 7 6 4 29 29 H 1.08991 * 109.47617 * 59.99819 * 7 6 4 30 30 H 0.97002 * 120.00393 * 335.00076 * 10 8 7 31 31 H 0.97000 * 120.00092 * 354.89942 * 16 15 13 32 32 H 1.08995 * 109.47617 * 59.99794 * 21 8 7 33 33 H 1.08997 * 109.47141 * 179.97438 * 21 8 7 34 34 H 1.08995 * 109.47332 * 300.00610 * 22 21 8 35 35 H 1.09004 * 109.47142 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.7130 -2.0404 -0.5903 6 6 3.6476 -1.0929 -0.6101 7 6 4.4123 -2.4181 -0.6113 8 6 4.5585 -2.9237 0.8254 9 1 5.1061 -2.1888 1.4153 10 7 5.2913 -4.1924 0.8243 11 6 5.9740 -4.5771 1.9208 12 8 5.9813 -3.8710 2.9119 13 6 6.7057 -5.8449 1.9200 14 1 6.7830 -6.4231 1.0111 15 6 7.3055 -6.3079 3.0977 16 7 8.0351 -7.3918 3.0769 17 14 7.0627 -5.3761 4.6985 18 1 7.7954 -6.0673 5.7896 19 1 5.6156 -5.3273 5.0281 20 1 7.5836 -3.9933 4.5501 21 6 3.1713 -3.1360 1.4349 22 6 2.4066 -1.8108 1.4361 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 4.1950 -0.3576 -0.0205 27 1 3.5435 -0.7330 -1.6338 28 1 5.4005 -2.2669 -1.0460 29 1 3.8649 -3.1530 -1.2012 30 1 5.2851 -4.7554 0.0344 31 1 8.1012 -7.9164 2.2637 32 1 2.6238 -3.8710 0.8450 33 1 3.2754 -3.4967 2.4582 34 1 2.9542 -1.0759 2.0260 35 1 1.4181 -1.9621 1.8699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887253996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:34 Heat of formation + Delta-G solvation = -120.480689 kcal Electronic energy + Delta-G solvation = -17214.026555 eV Core-core repulsion = 14403.173679 eV Total energy + Delta-G solvation = -2810.852876 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14444 -38.44995 -36.78700 -33.33454 -32.78735 -31.02087 -30.48077 -28.80136 -25.99216 -22.95502 -22.61690 -20.13858 -19.70111 -19.32306 -17.92769 -16.23583 -15.85813 -15.19059 -15.12817 -15.07711 -14.15260 -13.86312 -13.53631 -13.30782 -12.97637 -12.93219 -12.49271 -12.32806 -12.14229 -12.07376 -11.88980 -11.35729 -11.09170 -11.05051 -10.51402 -10.24338 -10.18302 -10.04703 -9.53890 -9.19438 -8.95511 -7.95331 -7.85817 -6.97078 -4.91251 1.81682 3.59646 3.70102 3.86552 4.08995 4.35998 4.43540 4.60538 4.65478 4.74982 4.86123 5.12178 5.17340 5.24528 5.30983 5.36209 5.47804 5.53932 5.57910 5.66004 5.72898 5.85221 5.97004 6.03738 6.16986 6.22991 6.32263 6.57459 6.67912 7.37604 7.52543 7.73045 7.78694 8.12574 8.85656 9.10454 10.09334 10.35012 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.048785 B = 0.005341 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.811737 B = 5241.657167 C = 5482.578261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.359 3.641 3 O -0.459 6.459 4 C -0.137 4.137 5 H 0.096 0.904 6 C -0.102 4.102 7 C -0.124 4.124 8 C 0.151 3.849 9 H 0.079 0.921 10 N -0.752 5.752 11 C 0.552 3.448 12 O -0.618 6.618 13 C -0.600 4.600 14 H 0.069 0.931 15 C 0.060 3.940 16 N -0.835 5.835 17 Si 1.131 2.869 18 H -0.323 1.323 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.126 4.126 22 C -0.101 4.101 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.386 0.614 31 H 0.277 0.723 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.231 9.414 -8.156 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.235 3.765 3 O -0.332 6.332 4 C -0.156 4.156 5 H 0.114 0.886 6 C -0.140 4.140 7 C -0.162 4.162 8 C 0.045 3.955 9 H 0.097 0.903 10 N -0.402 5.402 11 C 0.361 3.639 12 O -0.511 6.511 13 C -0.636 4.636 14 H 0.087 0.913 15 C -0.157 4.157 16 N -0.463 5.463 17 Si 0.964 3.036 18 H -0.255 1.255 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.165 4.165 22 C -0.140 4.140 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.218 0.782 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.438 10.438 -6.003 18.044 hybrid contribution -0.624 -0.598 -2.369 2.522 sum -14.062 9.840 -8.372 19.096 Atomic orbital electron populations 1.22320 0.94719 1.04545 1.04660 1.24725 0.91828 0.90299 0.69683 1.90398 1.72098 1.35195 1.35544 1.21854 0.97750 0.96371 0.99666 0.88617 1.21375 0.94054 0.97881 1.00700 1.21803 1.00567 0.96609 0.97236 1.20618 0.91852 0.88248 0.94809 0.90301 1.45817 1.54836 1.21922 1.17642 1.18443 0.77874 0.86688 0.80928 1.90137 1.69565 1.57490 1.33916 1.22055 1.36435 1.05731 0.99381 0.91305 1.27157 0.88700 0.95386 1.04462 1.70657 1.29652 1.13532 1.32449 0.82359 0.76197 0.74180 0.70834 1.25531 1.21936 1.20814 1.21942 0.96164 0.95719 1.02661 1.21413 1.00807 0.98378 0.93373 0.88644 0.89929 0.89680 0.90800 0.91863 0.91294 0.91822 0.78229 0.91262 0.92152 0.90691 0.91302 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.45 10.25 36.00 0.37 -1.08 16 2 C 0.36 3.85 6.38 -29.03 -0.19 3.66 16 3 O -0.46 -6.64 16.84 5.99 0.10 -6.53 16 4 C -0.14 -1.46 2.45 -91.77 -0.22 -1.69 16 5 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 6 C -0.10 -1.24 4.73 -26.73 -0.13 -1.36 16 7 C -0.12 -1.65 5.39 -26.73 -0.14 -1.80 16 8 C 0.15 2.62 2.45 -67.93 -0.17 2.45 16 9 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 10 N -0.75 -15.61 5.07 -55.21 -0.28 -15.89 16 11 C 0.55 14.60 7.53 -12.99 -0.10 14.50 16 12 O -0.62 -17.69 11.73 5.20 0.06 -17.63 16 13 C -0.60 -16.98 9.96 -35.63 -0.36 -17.33 16 14 H 0.07 1.92 8.05 -52.49 -0.42 1.50 16 15 C 0.06 1.75 5.52 -17.37 -0.10 1.65 16 16 N -0.84 -24.34 13.64 55.55 0.76 -23.58 16 17 Si 1.13 30.19 25.99 -169.99 -4.42 25.77 16 18 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16 19 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 20 H -0.28 -7.75 6.78 56.52 0.38 -7.37 16 21 C -0.13 -1.94 5.50 -26.73 -0.15 -2.08 16 22 C -0.10 -1.24 5.19 -26.73 -0.14 -1.38 16 23 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.39 7.15 8.58 -40.82 -0.35 6.80 16 31 H 0.28 7.73 8.72 -40.82 -0.36 7.37 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -33.03 289.89 -6.11 -39.15 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.39 Total: -1.20 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.31 Total: -4.46 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.48 Total: -39.47 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 14 Polarization: 30.19 SS G_CDS: -4.42 Total: 25.77 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.03 -6.11 -39.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887253996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.335 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds