Wall clock time and date at job start Sun Mar 29 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20766 * 120.00070 * 2 1 4 4 C 1.50704 * 119.99791 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.46949 * 34.99808 * 4 2 1 6 6 C 1.52998 * 109.46927 * 155.00014 * 4 2 1 7 7 C 1.53001 * 109.46918 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.46772 * 299.99487 * 7 6 4 9 9 H 1.08995 * 109.47113 * 300.00037 * 8 7 6 10 10 N 1.46505 * 109.46742 * 180.02562 * 8 7 6 11 11 C 1.34780 * 119.99680 * 155.00112 * 10 8 7 12 12 O 1.21687 * 119.99961 * 0.02562 * 11 10 8 13 13 C 1.46373 * 119.99746 * 179.97438 * 11 10 8 14 14 H 1.07996 * 120.00152 * 6.25404 * 13 11 10 15 15 C 1.40045 * 119.99626 * 186.24684 * 13 11 10 16 16 N 1.30678 * 119.99940 * 184.67774 * 15 13 11 17 17 Si 1.86805 * 120.00417 * 4.67616 * 15 13 11 18 18 H 1.48500 * 109.47185 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.46787 * 60.00193 * 17 15 13 20 20 H 1.48502 * 109.46779 * 300.00210 * 17 15 13 21 21 C 1.52998 * 109.46980 * 60.00551 * 8 7 6 22 22 C 1.53001 * 109.46918 * 299.99359 * 21 8 7 23 23 H 1.08997 * 109.47283 * 269.99652 * 1 2 3 24 24 H 1.09003 * 109.46961 * 29.99653 * 1 2 3 25 25 H 1.08996 * 109.47532 * 149.99573 * 1 2 3 26 26 H 1.08995 * 109.47617 * 59.99680 * 6 4 2 27 27 H 1.09007 * 109.47002 * 299.99529 * 6 4 2 28 28 H 1.09005 * 109.46949 * 179.97438 * 7 6 4 29 29 H 1.08991 * 109.47617 * 59.99819 * 7 6 4 30 30 H 0.97002 * 120.00393 * 335.00076 * 10 8 7 31 31 H 0.97000 * 120.00092 * 354.89942 * 16 15 13 32 32 H 1.08995 * 109.47617 * 59.99794 * 21 8 7 33 33 H 1.08997 * 109.47141 * 179.97438 * 21 8 7 34 34 H 1.08995 * 109.47332 * 300.00610 * 22 21 8 35 35 H 1.09004 * 109.47142 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3052 -0.0006 5 1 1.7130 -2.0404 -0.5903 6 6 3.6476 -1.0929 -0.6101 7 6 4.4123 -2.4181 -0.6113 8 6 4.5585 -2.9237 0.8254 9 1 5.1061 -2.1888 1.4153 10 7 5.2913 -4.1924 0.8243 11 6 5.9740 -4.5771 1.9208 12 8 5.9813 -3.8710 2.9119 13 6 6.7057 -5.8449 1.9200 14 1 6.7830 -6.4231 1.0111 15 6 7.3055 -6.3079 3.0977 16 7 8.0351 -7.3918 3.0769 17 14 7.0627 -5.3761 4.6985 18 1 7.7954 -6.0673 5.7896 19 1 5.6156 -5.3273 5.0281 20 1 7.5836 -3.9933 4.5501 21 6 3.1713 -3.1360 1.4349 22 6 2.4066 -1.8108 1.4361 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 4.1950 -0.3576 -0.0205 27 1 3.5435 -0.7330 -1.6338 28 1 5.4005 -2.2669 -1.0460 29 1 3.8649 -3.1530 -1.2012 30 1 5.2851 -4.7554 0.0344 31 1 8.1012 -7.9164 2.2637 32 1 2.6238 -3.8710 0.8450 33 1 3.2754 -3.4967 2.4582 34 1 2.9542 -1.0759 2.0260 35 1 1.4181 -1.9621 1.8699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887253996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:34 Heat of formation + Delta-G solvation = -143.779494 kcal Electronic energy + Delta-G solvation = -17215.036867 eV Core-core repulsion = 14403.173679 eV Total energy + Delta-G solvation = -2811.863188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.16257 -40.06016 -38.30516 -35.16151 -34.75884 -32.04053 -31.55819 -29.96626 -27.95377 -24.19787 -23.72301 -21.71950 -21.24501 -20.29677 -19.95967 -17.54954 -17.19550 -16.85427 -16.33211 -15.95887 -15.78277 -15.44267 -15.00570 -14.83470 -14.59647 -14.23848 -14.11152 -13.40963 -13.23018 -13.13649 -12.94244 -12.64185 -12.53033 -12.29850 -12.16276 -12.11940 -11.47224 -11.35471 -11.25919 -11.16826 -10.44106 -10.07233 -9.68631 -9.19618 -7.13926 1.00441 1.42428 1.53623 1.95943 2.21249 2.39829 2.85074 3.16387 3.29448 3.67083 3.71719 4.05796 4.13549 4.23643 4.38045 4.40806 4.47724 4.49853 4.67990 4.72177 4.77630 4.87262 5.02640 5.03002 5.13159 5.16471 5.27582 5.32948 5.40148 5.50201 5.55814 5.90776 6.08411 6.59241 6.64114 7.19914 8.02924 8.11674 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.048785 B = 0.005341 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.811737 B = 5241.657167 C = 5482.578261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.363 3.637 3 O -0.505 6.505 4 C -0.135 4.135 5 H 0.132 0.868 6 C -0.101 4.101 7 C -0.112 4.112 8 C 0.144 3.856 9 H 0.042 0.958 10 N -0.738 5.738 11 C 0.550 3.450 12 O -0.643 6.643 13 C -0.617 4.617 14 H 0.067 0.933 15 C 0.029 3.971 16 N -0.851 5.851 17 Si 1.162 2.838 18 H -0.308 1.308 19 H -0.294 1.294 20 H -0.299 1.299 21 C -0.120 4.120 22 C -0.095 4.095 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.399 0.601 31 H 0.278 0.722 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 9.533 -9.565 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.242 3.758 3 O -0.382 6.382 4 C -0.153 4.153 5 H 0.150 0.850 6 C -0.139 4.139 7 C -0.149 4.149 8 C 0.039 3.961 9 H 0.060 0.940 10 N -0.387 5.387 11 C 0.356 3.644 12 O -0.538 6.538 13 C -0.654 4.654 14 H 0.085 0.915 15 C -0.185 4.185 16 N -0.479 5.479 17 Si 0.994 3.006 18 H -0.238 1.238 19 H -0.222 1.222 20 H -0.228 1.228 21 C -0.159 4.159 22 C -0.133 4.133 23 H 0.127 0.873 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.234 0.766 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.905 10.536 -7.447 20.480 hybrid contribution 0.121 -0.601 -1.995 2.087 sum -15.784 9.935 -9.442 20.904 Atomic orbital electron populations 1.22345 0.91313 1.06133 1.05908 1.25195 0.93605 0.89274 0.67769 1.90403 1.73331 1.36608 1.37847 1.21900 0.97245 0.97527 0.98662 0.84977 1.21342 0.94704 0.96329 1.01489 1.21707 1.01180 0.97807 0.94247 1.20868 0.92106 0.85639 0.97480 0.93974 1.45595 1.53606 1.23084 1.16444 1.18340 0.78102 0.86081 0.81921 1.90120 1.70340 1.58072 1.35294 1.22246 1.37188 1.06714 0.99257 0.91477 1.27759 0.88834 0.95761 1.06130 1.70660 1.30489 1.14032 1.32726 0.81931 0.75939 0.72656 0.70062 1.23825 1.22167 1.22784 1.21836 0.95420 0.98090 1.00525 1.21332 1.01445 0.95855 0.94679 0.87325 0.89704 0.86814 0.93462 0.90052 0.91798 0.88954 0.76645 0.91152 0.89719 0.94425 0.93697 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 10.25 71.24 0.73 -1.27 16 2 C 0.36 6.77 6.38 29.10 0.19 6.96 16 3 O -0.51 -14.09 16.84 -1.47 -0.02 -14.12 16 4 C -0.13 -2.42 2.45 -11.54 -0.03 -2.44 16 5 H 0.13 1.50 8.10 -2.39 -0.02 1.49 16 6 C -0.10 -2.23 4.73 30.59 0.14 -2.09 16 7 C -0.11 -2.72 5.39 30.60 0.16 -2.55 16 8 C 0.14 4.90 2.45 44.99 0.11 5.01 16 9 H 0.04 1.75 7.58 -2.39 -0.02 1.73 16 10 N -0.74 -30.09 5.07 -446.82 -2.27 -32.36 16 11 C 0.55 29.20 7.53 86.36 0.65 29.85 16 12 O -0.64 -37.45 11.73 -4.31 -0.05 -37.50 16 13 C -0.62 -35.08 9.96 24.83 0.25 -34.84 16 14 H 0.07 3.75 8.05 -2.91 -0.02 3.72 16 15 C 0.03 1.71 5.52 85.30 0.47 2.18 16 16 N -0.85 -49.57 13.64 21.84 0.30 -49.27 16 17 Si 1.16 61.85 25.99 68.60 1.78 63.64 16 18 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 19 H -0.29 -15.58 7.11 99.48 0.71 -14.88 16 20 H -0.30 -16.73 6.78 99.48 0.67 -16.05 16 21 C -0.12 -3.50 5.50 30.59 0.17 -3.34 16 22 C -0.09 -2.11 5.19 30.60 0.16 -1.96 16 23 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.11 0.52 8.08 -2.39 -0.02 0.50 16 26 H 0.05 1.30 7.87 -2.39 -0.02 1.28 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.40 14.13 8.58 -92.71 -0.80 13.33 16 31 H 0.28 15.57 8.72 -92.71 -0.81 14.76 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -73.04 289.89 2.95 -70.08 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 0.21 Total: 4.01 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 3.00 Total: -4.48 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.97 Total: -81.63 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.08 Total: -51.62 kcal Atomic # 14 Polarization: 61.85 SS G_CDS: 1.78 Total: 63.64 kcal Total: -73.04 2.95 -70.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887253996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.695 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds