Wall clock time and date at job start Sun Mar 29 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99966 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00531 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99906 * 180.02562 * 12 11 10 15 15 C 1.47866 * 126.92948 * 359.68015 * 14 12 11 16 16 C 1.55993 * 105.12600 * 181.81432 * 15 14 12 17 17 H 1.09002 * 116.18017 * 159.92060 * 16 15 14 18 18 C 1.57087 * 99.46904 * 33.16210 * 16 15 14 19 19 C 1.49281 * 126.93018 * 180.02562 * 14 12 11 20 20 H 1.09007 * 116.12166 * 15.99423 * 19 14 12 21 21 C 1.56010 * 104.12934 * 246.88897 * 19 14 12 22 22 N 1.48290 * 105.06610 * 288.79376 * 21 19 14 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 25 25 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 26 26 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 27 27 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 28 28 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 29 29 H 1.08999 * 110.31482 * 300.85079 * 15 14 12 30 30 H 1.09003 * 110.30963 * 63.03008 * 15 14 12 31 31 H 1.08998 * 112.35860 * 191.54463 * 18 16 15 32 32 H 1.09003 * 112.35213 * 64.13606 * 18 16 15 33 33 H 1.09000 * 110.32505 * 47.69096 * 21 19 14 34 34 H 1.09000 * 110.31947 * 169.89455 * 21 19 14 35 35 H 1.00898 * 110.99700 * 122.54434 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 7 5.4865 -2.6366 0.0125 12 6 6.1604 -3.8038 0.0180 13 8 5.5525 -4.8568 0.0226 14 7 7.5081 -3.8038 0.0185 15 6 8.3966 -2.6219 0.0069 16 6 9.8443 -3.2013 -0.0344 17 1 10.6236 -2.5239 -0.3838 18 6 9.5811 -4.4940 -0.8872 19 6 8.4051 -4.9971 0.0237 20 1 7.9414 -5.9471 -0.2422 21 6 9.1081 -4.9391 1.4152 22 7 10.0451 -3.7932 1.3262 23 1 -0.4850 0.8401 -0.0041 24 1 3.8752 -0.6844 -0.8859 25 1 3.8746 -0.6762 0.8940 26 1 3.6579 -3.1467 0.9046 27 1 3.6585 -3.1541 -0.8754 28 1 5.9715 -1.7966 0.0092 29 1 8.2052 -2.0133 -0.8770 30 1 8.2530 -2.0317 0.9120 31 1 10.4317 -5.1755 -0.8805 32 1 9.2510 -4.2624 -1.8999 33 1 8.3746 -4.7679 2.2031 34 1 9.6561 -5.8627 1.6013 35 1 9.8553 -3.1140 2.0477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891769494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:40 Heat of formation + Delta-G solvation = 1.270915 kcal Electronic energy + Delta-G solvation = -17125.017551 eV Core-core repulsion = 14351.736971 eV Total energy + Delta-G solvation = -2773.280580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06844 -38.68640 -34.95925 -33.46577 -32.64906 -30.34545 -29.98141 -29.17790 -25.42883 -24.43597 -21.67263 -20.95914 -20.73550 -19.35013 -18.20608 -16.99775 -16.75406 -15.85909 -15.72010 -14.56862 -14.48812 -14.20710 -13.57713 -13.38525 -13.14597 -12.94637 -12.61944 -12.45491 -12.16799 -11.82239 -11.55236 -11.52300 -11.47069 -11.21252 -10.41211 -10.29967 -10.00605 -9.83285 -9.34504 -9.11363 -8.68617 -8.61252 -8.28366 -6.12259 -4.12334 2.63582 3.23502 3.31004 3.32320 3.40415 3.74758 3.98880 4.22216 4.35527 4.36231 4.53241 4.71064 5.00650 5.17306 5.20518 5.23845 5.46339 5.52080 5.56653 5.66248 5.70326 5.90441 6.15788 6.22029 6.27694 6.55644 6.78457 6.92706 7.06146 7.22159 7.27538 7.65757 8.19940 8.43826 8.84303 8.92541 9.47757 11.00824 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043513 B = 0.004919 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.334408 B = 5690.763024 C = 6088.281306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.148 3.852 11 N -0.739 5.739 12 C 0.719 3.281 13 O -0.591 6.591 14 N -0.647 5.647 15 C 0.067 3.933 16 C 0.057 3.943 17 H 0.134 0.866 18 C -0.135 4.135 19 C 0.131 3.869 20 H 0.127 0.873 21 C 0.029 3.971 22 N -0.671 5.671 23 H 0.265 0.735 24 H 0.017 0.983 25 H 0.021 0.979 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.390 0.610 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.434 -4.605 0.079 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.393 5.393 12 C 0.421 3.579 13 O -0.469 6.469 14 N -0.388 5.388 15 C -0.058 4.058 16 C -0.052 4.052 17 H 0.151 0.849 18 C -0.173 4.173 19 C 0.027 3.973 20 H 0.145 0.855 21 C -0.102 4.102 22 N -0.300 5.300 23 H 0.075 0.925 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.223 0.777 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 22.242 -5.639 -0.025 22.946 hybrid contribution -0.426 1.970 0.135 2.020 sum 21.816 -3.669 0.110 22.122 Atomic orbital electron populations 1.69904 1.06274 1.27052 1.50407 1.24995 0.94758 0.99106 0.94370 0.86750 0.80223 0.83581 0.78496 1.20214 1.21225 1.19191 1.20912 0.88568 0.94942 1.51649 0.90560 1.19788 0.97991 0.91352 0.96723 1.21401 0.74618 0.99926 1.01536 1.45545 1.08871 1.06141 1.78715 1.15574 0.79542 0.84885 0.77894 1.90907 1.66537 1.30749 1.58683 1.48425 1.03298 1.07550 1.79484 1.23207 0.91513 0.89148 1.01911 1.24528 0.93832 0.96315 0.90549 0.84852 1.23941 0.98160 0.96872 0.98350 1.23842 0.88053 0.90522 0.94915 0.85510 1.23509 0.93989 0.95558 0.97106 1.63217 1.52336 1.10859 1.03592 0.92531 0.96518 0.96115 0.92118 0.92103 0.77686 0.91127 0.91551 0.88788 0.89752 0.92148 0.89572 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.02 -0.48 4.16 -27.89 -0.12 -0.60 16 10 C 0.15 3.14 5.61 -4.05 -0.02 3.11 16 11 N -0.74 -13.04 5.53 -65.23 -0.36 -13.40 16 12 C 0.72 12.85 8.54 -86.92 -0.74 12.11 16 13 O -0.59 -12.91 16.69 5.29 0.09 -12.82 16 14 N -0.65 -8.53 2.95 -162.48 -0.48 -9.01 16 15 C 0.07 0.64 5.65 -1.69 -0.01 0.63 16 16 C 0.06 0.43 5.82 -62.31 -0.36 0.07 16 17 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 18 C -0.13 -1.10 6.80 -22.33 -0.15 -1.25 16 19 C 0.13 1.43 5.23 -62.59 -0.33 1.10 16 20 H 0.13 1.47 8.05 -51.92 -0.42 1.06 16 21 C 0.03 0.28 6.97 -1.45 -0.01 0.27 16 22 N -0.67 -5.65 7.31 -98.00 -0.72 -6.36 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.37 7.58 -51.93 -0.39 -0.02 16 25 H 0.02 0.47 7.19 -51.93 -0.37 0.10 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.39 5.89 7.55 -40.82 -0.31 5.58 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.34 2.65 8.53 -39.29 -0.34 2.32 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -33.17 286.77 -8.42 -41.59 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.21 Total: 3.66 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.17 Total: 2.24 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.78 Total: -55.44 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.17 -8.42 -41.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.863 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds