Wall clock time and date at job start Sun Mar 29 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99966 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00531 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99906 * 180.02562 * 12 11 10 15 15 C 1.47866 * 126.92948 * 359.68015 * 14 12 11 16 16 C 1.55993 * 105.12600 * 181.81432 * 15 14 12 17 17 H 1.09002 * 116.18017 * 159.92060 * 16 15 14 18 18 C 1.57087 * 99.46904 * 33.16210 * 16 15 14 19 19 C 1.49281 * 126.93018 * 180.02562 * 14 12 11 20 20 H 1.09007 * 116.12166 * 15.99423 * 19 14 12 21 21 C 1.56010 * 104.12934 * 246.88897 * 19 14 12 22 22 N 1.48290 * 105.06610 * 288.79376 * 21 19 14 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 25 25 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 26 26 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 27 27 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 28 28 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 29 29 H 1.08999 * 110.31482 * 300.85079 * 15 14 12 30 30 H 1.09003 * 110.30963 * 63.03008 * 15 14 12 31 31 H 1.08998 * 112.35860 * 191.54463 * 18 16 15 32 32 H 1.09003 * 112.35213 * 64.13606 * 18 16 15 33 33 H 1.09000 * 110.32505 * 47.69096 * 21 19 14 34 34 H 1.09000 * 110.31947 * 169.89455 * 21 19 14 35 35 H 1.00898 * 110.99700 * 122.54434 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 7 5.4865 -2.6366 0.0125 12 6 6.1604 -3.8038 0.0180 13 8 5.5525 -4.8568 0.0226 14 7 7.5081 -3.8038 0.0185 15 6 8.3966 -2.6219 0.0069 16 6 9.8443 -3.2013 -0.0344 17 1 10.6236 -2.5239 -0.3838 18 6 9.5811 -4.4940 -0.8872 19 6 8.4051 -4.9971 0.0237 20 1 7.9414 -5.9471 -0.2422 21 6 9.1081 -4.9391 1.4152 22 7 10.0451 -3.7932 1.3262 23 1 -0.4850 0.8401 -0.0041 24 1 3.8752 -0.6844 -0.8859 25 1 3.8746 -0.6762 0.8940 26 1 3.6579 -3.1467 0.9046 27 1 3.6585 -3.1541 -0.8754 28 1 5.9715 -1.7966 0.0092 29 1 8.2052 -2.0133 -0.8770 30 1 8.2530 -2.0317 0.9120 31 1 10.4317 -5.1755 -0.8805 32 1 9.2510 -4.2624 -1.8999 33 1 8.3746 -4.7679 2.2031 34 1 9.6561 -5.8627 1.6013 35 1 9.8553 -3.1140 2.0477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891769494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:40 Heat of formation + Delta-G solvation = -25.018656 kcal Electronic energy + Delta-G solvation = -17126.157552 eV Core-core repulsion = 14351.736971 eV Total energy + Delta-G solvation = -2774.420581 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.00386 -39.98274 -36.67059 -34.94680 -34.25411 -31.96411 -30.76749 -30.17952 -26.95023 -25.68134 -23.00031 -22.40237 -21.66154 -20.48428 -19.33228 -18.98523 -17.71863 -17.01645 -16.95561 -16.25009 -15.86871 -15.79027 -14.92582 -14.76060 -14.57349 -14.11118 -13.69300 -13.38561 -13.19515 -13.08026 -12.98737 -12.53035 -12.33165 -12.23163 -12.19670 -12.12133 -11.78693 -11.59199 -11.37947 -10.80966 -10.30934 -9.84121 -9.25688 -8.31973 -6.39773 1.37115 1.40208 1.46365 1.51391 2.03634 2.35105 2.92158 3.02797 3.09922 3.39074 3.52807 3.79257 3.97738 4.23292 4.31166 4.38130 4.41185 4.50257 4.69567 4.69611 4.84871 4.88376 4.97874 5.02453 5.08359 5.18516 5.35693 5.38578 5.58053 5.62183 5.99675 6.20535 6.29262 6.67041 6.91957 7.24735 7.47481 8.84939 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043513 B = 0.004919 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.334408 B = 5690.763024 C = 6088.281306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.541 4.541 8 H 0.028 0.972 9 C -0.009 4.009 10 C 0.164 3.836 11 N -0.730 5.730 12 C 0.713 3.287 13 O -0.641 6.641 14 N -0.642 5.642 15 C 0.058 3.942 16 C 0.073 3.927 17 H 0.167 0.833 18 C -0.123 4.123 19 C 0.112 3.888 20 H 0.111 0.889 21 C 0.036 3.964 22 N -0.668 5.668 23 H 0.269 0.731 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.406 0.594 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.183 -2.570 -0.124 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.162 1.162 7 C -0.579 4.579 8 H 0.047 0.953 9 C -0.047 4.047 10 C 0.040 3.960 11 N -0.385 5.385 12 C 0.415 3.585 13 O -0.523 6.523 14 N -0.381 5.381 15 C -0.065 4.065 16 C -0.037 4.037 17 H 0.184 0.816 18 C -0.162 4.162 19 C 0.009 3.991 20 H 0.128 0.872 21 C -0.094 4.094 22 N -0.298 5.298 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.242 0.758 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 26.081 -3.595 -0.224 26.328 hybrid contribution -1.607 1.222 0.203 2.029 sum 24.473 -2.374 -0.021 24.588 Atomic orbital electron populations 1.70076 1.08589 1.28506 1.51796 1.26079 0.95691 1.03851 0.93542 0.85524 0.79568 0.77266 0.79416 1.18830 1.21094 1.16158 1.21224 0.91426 0.93455 1.51829 0.95343 1.19618 0.94506 0.92588 0.97962 1.20900 0.76941 0.98455 0.99693 1.45145 1.07278 1.07099 1.78961 1.15731 0.81051 0.83958 0.77759 1.90868 1.68227 1.32367 1.60825 1.48444 1.02001 1.10074 1.77602 1.23550 0.92026 0.88038 1.02922 1.24724 0.93161 0.96033 0.89734 0.81556 1.23920 0.97050 0.97378 0.97827 1.24111 0.88484 0.89481 0.97053 0.87151 1.23412 0.93745 0.96830 0.95440 1.63270 1.51389 1.10729 1.04364 0.92241 0.94651 0.94617 0.94189 0.94073 0.75783 0.89877 0.90741 0.87125 0.89629 0.94138 0.88363 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 2 C 0.01 0.32 5.47 84.66 0.46 0.79 16 3 Si 0.96 42.34 27.47 68.60 1.88 44.22 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 7 C -0.54 -31.34 9.66 25.60 0.25 -31.09 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.41 4.16 29.85 0.12 -0.28 16 10 C 0.16 7.09 5.61 86.38 0.48 7.57 16 11 N -0.73 -25.10 5.53 -478.55 -2.64 -27.74 16 12 C 0.71 25.43 8.54 179.06 1.53 26.96 16 13 O -0.64 -28.99 16.69 -3.98 -0.07 -29.05 16 14 N -0.64 -16.09 2.95 -786.22 -2.32 -18.41 16 15 C 0.06 0.92 5.65 87.15 0.49 1.41 16 16 C 0.07 0.80 5.82 46.84 0.27 1.07 16 17 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 18 C -0.12 -1.63 6.80 33.45 0.23 -1.41 16 19 C 0.11 2.32 5.23 46.91 0.25 2.57 16 20 H 0.11 2.62 8.05 -2.38 -0.02 2.60 16 21 C 0.04 0.64 6.97 87.08 0.61 1.24 16 22 N -0.67 -9.05 7.31 -463.97 -3.39 -12.44 16 23 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.04 1.49 7.58 -2.38 -0.02 1.47 16 25 H 0.04 1.53 7.19 -2.39 -0.02 1.51 16 26 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.41 11.22 7.55 -92.71 -0.70 10.52 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.11 7.88 -2.39 -0.02 1.09 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.34 4.28 8.53 -89.70 -0.77 3.51 16 Total: -1.00 -74.94 286.77 -1.96 -76.91 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -0.42 Total: 16.89 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 4.69 Total: 8.84 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -8.05 Total: -117.80 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.07 Total: -29.05 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -74.94 -1.96 -76.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.888 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds