Wall clock time and date at job start Sun Mar 29 2020 22:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46869 * 2 1 4 4 C 1.35779 * 116.99862 * 180.02562 * 3 2 1 5 5 C 1.35128 * 125.84367 * 180.02562 * 4 3 2 6 6 C 1.41438 * 106.79191 * 179.97438 * 5 4 3 7 7 C 1.34438 * 106.90167 * 359.97438 * 6 5 4 8 8 C 1.50698 * 125.74547 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47054 * 90.00131 * 8 7 6 10 10 C 1.36937 * 120.00071 * 269.99792 * 9 8 7 11 11 H 1.08000 * 120.00106 * 146.04251 * 10 9 8 12 12 C 1.38813 * 119.99863 * 326.05337 * 10 9 8 13 13 N 1.31617 * 120.00235 * 336.64371 * 12 10 9 14 14 Si 1.86805 * 119.99924 * 156.64814 * 12 10 9 15 15 H 1.48499 * 109.47246 * 89.99399 * 14 12 10 16 16 H 1.48498 * 109.47044 * 209.99747 * 14 12 10 17 17 H 1.48502 * 109.46727 * 329.99601 * 14 12 10 18 18 C 1.46504 * 120.00005 * 90.00435 * 9 8 7 19 19 C 1.53001 * 109.47092 * 89.43869 * 18 9 8 20 20 O 1.34328 * 125.83856 * 359.94454 * 4 3 2 21 21 H 1.08997 * 109.47508 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47061 * 300.00058 * 1 2 3 23 23 H 1.09006 * 109.47285 * 59.99538 * 1 2 3 24 24 H 1.08998 * 109.46997 * 240.00455 * 2 1 3 25 25 H 1.08999 * 109.47279 * 120.00056 * 2 1 3 26 26 H 1.08003 * 126.60279 * 0.20783 * 5 4 3 27 27 H 1.08008 * 126.55169 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47151 * 210.00616 * 8 7 6 29 29 H 1.09004 * 109.47014 * 330.00241 * 8 7 6 30 30 H 0.96998 * 120.00256 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.46699 * 209.44280 * 18 9 8 32 32 H 1.09001 * 109.46720 * 329.44451 * 18 9 8 33 33 H 1.09002 * 109.46844 * 180.02562 * 19 18 9 34 34 H 1.08991 * 109.47225 * 300.00082 * 19 18 9 35 35 H 1.09001 * 109.46862 * 60.00669 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 3.9933 2.7148 -0.0001 6 6 5.3792 2.4323 -0.0004 7 6 5.5052 1.0939 -0.0003 8 6 6.8055 0.3321 0.0000 9 7 7.2264 0.0852 1.3814 10 6 8.0227 0.9930 2.0271 11 1 7.9086 1.1522 3.0892 12 6 8.9763 1.7089 1.3166 13 7 9.4449 1.2345 0.1818 14 14 9.5948 3.3457 1.9709 15 1 10.7757 3.1163 2.8415 16 1 9.9802 4.2196 0.8339 17 1 8.5199 4.0021 2.7576 18 6 6.7956 -1.1330 2.0719 19 6 7.8121 -2.2485 1.8202 20 8 4.2748 0.5487 0.0000 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.5354 3.6930 0.0038 27 1 6.1828 3.1540 0.0002 28 1 6.6692 -0.6195 -0.5139 29 1 7.5690 0.9163 -0.5136 30 1 10.1115 1.7346 -0.3146 31 1 6.7266 -0.9388 3.1422 32 1 5.8198 -1.4387 1.6944 33 1 7.4913 -3.1549 2.3336 34 1 7.8810 -2.4425 0.7499 35 1 8.7879 -1.9427 2.1977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891778917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:58 Heat of formation + Delta-G solvation = -10.245113 kcal Electronic energy + Delta-G solvation = -17384.740698 eV Core-core repulsion = 14578.667995 eV Total energy + Delta-G solvation = -2806.072703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85642 -38.20129 -35.97399 -32.47863 -31.86969 -31.65361 -29.94534 -27.90229 -25.19143 -23.56918 -23.01242 -21.06336 -20.63037 -19.58461 -18.16331 -16.90761 -16.45583 -14.97062 -14.90862 -14.55478 -14.40764 -13.87286 -13.64026 -13.05422 -12.70159 -12.55353 -12.24495 -12.17121 -12.10130 -11.62192 -11.26183 -11.21215 -11.16825 -10.79148 -10.71044 -10.44356 -10.18585 -10.07753 -9.82981 -9.08225 -8.57628 -7.19244 -6.77093 -5.90968 -3.40432 2.52608 2.98332 3.33320 3.42278 3.42577 3.47751 3.81241 4.45555 4.88355 4.94295 5.23018 5.25848 5.47890 5.52498 5.69771 5.73236 5.87858 5.89629 6.08471 6.28096 6.37291 6.45304 6.50269 6.63877 6.65522 6.82579 6.93750 7.18949 7.31684 7.37374 7.55468 7.76369 8.01225 8.40792 9.06698 9.70469 10.26712 11.12820 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.007171 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.715338 B = 3903.746767 C = 4606.135647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.276 6.276 4 C 0.143 3.857 5 C -0.227 4.227 6 C -0.191 4.191 7 C -0.002 4.002 8 C 0.213 3.787 9 N -0.573 5.573 10 C -0.256 4.256 11 H 0.064 0.936 12 C 0.012 3.988 13 N -0.888 5.888 14 Si 0.895 3.105 15 H -0.285 1.285 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.140 3.860 19 C -0.161 4.161 20 O -0.210 6.210 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.041 0.959 29 H 0.134 0.866 30 H 0.258 0.742 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.664 -2.584 -1.394 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.192 6.192 4 C 0.051 3.949 5 C -0.248 4.248 6 C -0.211 4.211 7 C -0.053 4.053 8 C 0.086 3.914 9 N -0.292 5.292 10 C -0.385 4.385 11 H 0.081 0.919 12 C -0.188 4.188 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.212 1.212 16 H -0.213 1.213 17 H -0.201 1.201 18 C 0.014 3.986 19 C -0.221 4.221 20 O -0.111 6.111 21 H 0.096 0.904 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.159 0.841 27 H 0.163 0.837 28 H 0.059 0.941 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.729 -2.711 -1.473 12.128 hybrid contribution 0.276 0.868 0.358 0.979 sum -11.453 -1.842 -1.115 11.654 Atomic orbital electron populations 1.21769 0.92739 1.02803 1.03369 1.22674 0.95618 0.81896 1.02132 1.86372 1.13369 1.28612 1.90854 1.20219 0.80230 0.87534 1.06944 1.20696 0.93165 0.95609 1.15301 1.21266 0.95053 0.95639 1.09181 1.24765 0.83074 0.94233 1.03241 1.19881 0.85943 0.97251 0.88346 1.43898 1.54848 1.18822 1.11618 1.19071 1.10763 1.15006 0.93679 0.91874 1.25059 0.95739 1.00116 0.97837 1.69913 1.29035 1.37003 1.17125 0.86419 0.78765 0.84178 0.78267 1.21191 1.21251 1.20138 1.20915 0.94504 0.86879 0.96252 1.22244 1.01592 0.97625 1.00599 1.83979 1.16343 1.36924 1.73821 0.90375 0.91546 0.91585 0.91942 0.91880 0.84056 0.83690 0.94083 0.84876 0.93221 0.93773 0.94803 0.94908 0.93707 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.02 16 2 C 0.05 0.68 6.41 37.16 0.24 0.92 16 3 O -0.28 -4.65 10.21 -42.18 -0.43 -5.09 16 4 C 0.14 2.80 7.87 29.63 0.23 3.04 16 5 C -0.23 -4.48 10.94 -39.47 -0.43 -4.92 16 6 C -0.19 -4.14 10.80 -39.71 -0.43 -4.57 16 7 C 0.00 -0.04 6.90 -35.65 -0.25 -0.29 16 8 C 0.21 5.04 5.82 -5.19 -0.03 5.01 16 9 N -0.57 -14.15 2.43 -174.60 -0.43 -14.58 16 10 C -0.26 -6.84 9.48 -15.06 -0.14 -6.99 16 11 H 0.06 1.71 7.93 -52.49 -0.42 1.29 16 12 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 13 N -0.89 -24.37 11.34 55.49 0.63 -23.74 16 14 Si 0.89 21.06 29.61 -169.99 -5.03 16.02 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.14 3.01 6.39 -4.04 -0.03 2.99 16 19 C -0.16 -3.18 10.24 37.16 0.38 -2.80 16 20 O -0.21 -4.42 10.16 -18.25 -0.19 -4.60 16 21 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.14 2.42 8.06 -52.48 -0.42 2.00 16 27 H 0.15 3.14 8.06 -52.48 -0.42 2.72 16 28 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.13 3.44 5.33 -51.93 -0.28 3.16 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.04 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -28.63 302.16 -6.36 -34.99 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.31 Total: 0.84 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.16 Total: -8.40 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.20 Total: -38.32 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.62 Total: -9.69 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.63 -6.36 -34.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891778917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.746 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds