Wall clock time and date at job start Sun Mar 29 2020 22:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46869 * 2 1 4 4 C 1.35779 * 116.99862 * 180.02562 * 3 2 1 5 5 C 1.35128 * 125.84367 * 180.02562 * 4 3 2 6 6 C 1.41438 * 106.79191 * 179.97438 * 5 4 3 7 7 C 1.34438 * 106.90167 * 359.97438 * 6 5 4 8 8 C 1.50698 * 125.74547 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47054 * 90.00131 * 8 7 6 10 10 C 1.36937 * 120.00071 * 269.99792 * 9 8 7 11 11 H 1.08000 * 120.00106 * 146.04251 * 10 9 8 12 12 C 1.38813 * 119.99863 * 326.05337 * 10 9 8 13 13 N 1.31617 * 120.00235 * 336.64371 * 12 10 9 14 14 Si 1.86805 * 119.99924 * 156.64814 * 12 10 9 15 15 H 1.48499 * 109.47246 * 89.99399 * 14 12 10 16 16 H 1.48498 * 109.47044 * 209.99747 * 14 12 10 17 17 H 1.48502 * 109.46727 * 329.99601 * 14 12 10 18 18 C 1.46504 * 120.00005 * 90.00435 * 9 8 7 19 19 C 1.53001 * 109.47092 * 89.43869 * 18 9 8 20 20 O 1.34328 * 125.83856 * 359.94454 * 4 3 2 21 21 H 1.08997 * 109.47508 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47061 * 300.00058 * 1 2 3 23 23 H 1.09006 * 109.47285 * 59.99538 * 1 2 3 24 24 H 1.08998 * 109.46997 * 240.00455 * 2 1 3 25 25 H 1.08999 * 109.47279 * 120.00056 * 2 1 3 26 26 H 1.08003 * 126.60279 * 0.20783 * 5 4 3 27 27 H 1.08008 * 126.55169 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47151 * 210.00616 * 8 7 6 29 29 H 1.09004 * 109.47014 * 330.00241 * 8 7 6 30 30 H 0.96998 * 120.00256 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.46699 * 209.44280 * 18 9 8 32 32 H 1.09001 * 109.46720 * 329.44451 * 18 9 8 33 33 H 1.09002 * 109.46844 * 180.02562 * 19 18 9 34 34 H 1.08991 * 109.47225 * 300.00082 * 19 18 9 35 35 H 1.09001 * 109.46862 * 60.00669 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 3.9933 2.7148 -0.0001 6 6 5.3792 2.4323 -0.0004 7 6 5.5052 1.0939 -0.0003 8 6 6.8055 0.3321 0.0000 9 7 7.2264 0.0852 1.3814 10 6 8.0227 0.9930 2.0271 11 1 7.9086 1.1522 3.0892 12 6 8.9763 1.7089 1.3166 13 7 9.4449 1.2345 0.1818 14 14 9.5948 3.3457 1.9709 15 1 10.7757 3.1163 2.8415 16 1 9.9802 4.2196 0.8339 17 1 8.5199 4.0021 2.7576 18 6 6.7956 -1.1330 2.0719 19 6 7.8121 -2.2485 1.8202 20 8 4.2748 0.5487 0.0000 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.5354 3.6930 0.0038 27 1 6.1828 3.1540 0.0002 28 1 6.6692 -0.6195 -0.5139 29 1 7.5690 0.9163 -0.5136 30 1 10.1115 1.7346 -0.3146 31 1 6.7266 -0.9388 3.1422 32 1 5.8198 -1.4387 1.6944 33 1 7.4913 -3.1549 2.3336 34 1 7.8810 -2.4425 0.7499 35 1 8.7879 -1.9427 2.1977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891778917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:58 Heat of formation + Delta-G solvation = -24.886228 kcal Electronic energy + Delta-G solvation = -17385.375584 eV Core-core repulsion = 14578.667995 eV Total energy + Delta-G solvation = -2806.707590 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.47660 -39.52565 -37.81858 -34.05020 -33.79274 -32.81403 -31.56327 -29.66828 -26.96042 -25.26354 -24.21557 -22.62232 -22.32876 -21.25801 -19.63897 -18.80525 -17.87385 -16.80435 -16.39502 -16.16916 -15.86013 -15.57314 -15.41588 -14.39338 -14.21742 -14.04620 -13.73012 -13.63842 -13.29274 -13.18046 -12.97410 -12.88646 -12.54941 -12.51658 -12.28696 -12.16634 -11.89672 -11.84403 -11.58631 -10.71701 -10.56884 -8.80977 -8.71511 -7.91684 -5.44596 0.90113 1.44279 1.50775 1.53602 1.59972 1.77318 2.38841 2.52364 3.23422 3.72093 3.95645 4.03769 4.12454 4.20773 4.29261 4.39915 4.54898 4.64920 4.79844 4.81946 4.88512 4.90915 4.99867 5.04200 5.17005 5.20331 5.25616 5.42307 5.56920 5.64614 5.70832 5.99383 6.38733 6.46892 7.08380 7.75798 8.29150 9.09998 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.007171 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.715338 B = 3903.746767 C = 4606.135647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 O -0.276 6.276 4 C 0.153 3.847 5 C -0.237 4.237 6 C -0.196 4.196 7 C -0.022 4.022 8 C 0.220 3.780 9 N -0.588 5.588 10 C -0.268 4.268 11 H 0.055 0.945 12 C -0.025 4.025 13 N -0.911 5.911 14 Si 0.950 3.050 15 H -0.283 1.283 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.136 3.864 19 C -0.148 4.148 20 O -0.213 6.213 21 H 0.104 0.896 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.167 0.833 27 H 0.139 0.861 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.257 0.743 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 -2.749 -1.116 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 O -0.192 6.192 4 C 0.060 3.940 5 C -0.257 4.257 6 C -0.216 4.216 7 C -0.073 4.073 8 C 0.093 3.907 9 N -0.308 5.308 10 C -0.398 4.398 11 H 0.073 0.927 12 C -0.222 4.222 13 N -0.555 5.555 14 Si 0.778 3.222 15 H -0.209 1.209 16 H -0.211 1.211 17 H -0.202 1.202 18 C 0.011 3.989 19 C -0.208 4.208 20 O -0.115 6.115 21 H 0.123 0.877 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.184 0.816 27 H 0.157 0.843 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.412 -2.893 -1.191 13.772 hybrid contribution 0.655 0.851 0.266 1.106 sum -12.757 -2.042 -0.925 12.953 Atomic orbital electron populations 1.21801 0.89620 1.04700 1.03764 1.23073 0.98052 0.80062 1.02232 1.86411 1.11406 1.31053 1.90355 1.20472 0.81145 0.87194 1.05239 1.20929 0.92242 0.96967 1.15542 1.21367 0.96151 0.95378 1.08706 1.24351 0.83297 0.94340 1.05298 1.19587 0.86118 0.97170 0.87863 1.44079 1.55026 1.19774 1.11891 1.19192 1.11112 1.15904 0.93571 0.92745 1.25620 0.96062 1.02368 0.98175 1.70011 1.29575 1.37867 1.18058 0.85563 0.78114 0.80915 0.77620 1.20938 1.21143 1.20158 1.21041 0.95452 0.86359 0.96058 1.22087 0.99808 0.98489 1.00396 1.83928 1.16113 1.37393 1.74017 0.87701 0.91292 0.91046 0.91605 0.92076 0.81569 0.84301 0.93535 0.87170 0.93380 0.93695 0.93580 0.91259 0.94430 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.04 0.96 6.41 71.98 0.46 1.42 16 3 O -0.28 -8.74 10.21 -68.96 -0.70 -9.44 16 4 C 0.15 5.75 7.87 67.10 0.53 6.28 16 5 C -0.24 -9.02 10.94 22.34 0.24 -8.78 16 6 C -0.20 -8.45 10.80 22.19 0.24 -8.21 16 7 C -0.02 -0.98 6.90 24.82 0.17 -0.81 16 8 C 0.22 10.53 5.82 85.63 0.50 11.03 16 9 N -0.59 -29.22 2.43 -706.32 -1.72 -30.94 16 10 C -0.27 -14.47 9.48 84.03 0.80 -13.67 16 11 H 0.05 2.98 7.93 -2.91 -0.02 2.95 16 12 C -0.02 -1.32 4.94 84.86 0.42 -0.90 16 13 N -0.91 -50.75 11.34 21.65 0.25 -50.51 16 14 Si 0.95 43.55 29.61 68.60 2.03 45.58 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 C 0.14 5.75 6.39 86.38 0.55 6.30 16 19 C -0.15 -5.72 10.24 71.98 0.74 -4.99 16 20 O -0.21 -8.81 10.16 16.69 0.17 -8.64 16 21 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.17 5.35 8.06 -2.91 -0.02 5.32 16 27 H 0.14 6.08 8.06 -2.91 -0.02 6.05 16 28 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.11 5.84 5.33 -2.39 -0.01 5.83 16 30 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.04 1.86 8.03 -2.39 -0.02 1.85 16 32 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -60.36 302.16 6.47 -53.89 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.05 Total: 13.87 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.39 Total: -13.82 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.47 Total: -81.45 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.53 Total: -18.08 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -60.36 6.47 -53.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891778917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.008 kcal (2) G-P(sol) polarization free energy of solvation -60.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds