Wall clock time and date at job start Sun Mar 29 2020 22:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35773 * 116.99889 * 2 1 4 4 C 1.35128 * 125.83956 * 180.02562 * 3 2 1 5 5 C 1.41452 * 106.78798 * 179.97438 * 4 3 2 6 6 C 1.34440 * 106.89788 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.73911 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47221 * 89.99806 * 7 6 5 9 9 C 1.46896 * 110.99663 * 293.95397 * 8 7 6 10 10 C 1.46894 * 110.99915 * 170.00202 * 8 7 6 11 11 H 1.09002 * 109.47104 * 309.99793 * 10 8 7 12 12 C 1.52997 * 109.47515 * 70.00061 * 10 8 7 13 13 C 1.50708 * 109.46991 * 190.00244 * 10 8 7 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99779 * 179.97438 * 15 13 10 17 17 Si 1.86795 * 120.00284 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47308 * 89.99617 * 17 15 13 19 19 H 1.48501 * 109.47369 * 209.99691 * 17 15 13 20 20 H 1.48502 * 109.47235 * 329.99860 * 17 15 13 21 21 O 1.34332 * 125.83763 * 0.30513 * 3 2 1 22 22 H 1.09003 * 109.47548 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47381 * 300.00112 * 1 2 3 24 24 H 1.09000 * 109.47560 * 60.00399 * 1 2 3 25 25 H 1.07994 * 126.60848 * 359.95790 * 4 3 2 26 26 H 1.08005 * 126.54764 * 180.02562 * 5 4 3 27 27 H 1.08999 * 109.47292 * 329.99849 * 7 6 5 28 28 H 1.08998 * 109.46979 * 209.99784 * 7 6 5 29 29 H 1.08998 * 109.47503 * 296.04235 * 9 8 7 30 30 H 1.09007 * 109.47634 * 56.04710 * 9 8 7 31 31 H 1.09003 * 109.46925 * 176.04443 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99762 * 12 10 8 33 33 H 1.09001 * 109.46832 * 299.99953 * 12 10 8 34 34 H 1.09004 * 109.47261 * 179.97438 * 12 10 8 35 35 H 0.96999 * 119.99874 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3806 1.4174 -0.0005 5 6 3.5761 2.8184 -0.0009 6 6 2.3562 3.3832 -0.0012 7 6 2.0714 4.8631 -0.0011 8 7 1.9793 5.3441 -1.3861 9 6 3.2763 5.2379 -2.0676 10 6 1.4717 6.7218 -1.4322 11 1 0.5659 6.7956 -0.8304 12 6 2.5320 7.6749 -0.8771 13 6 1.1587 7.0944 -2.8586 14 1 1.3211 6.3793 -3.6515 15 6 0.6651 8.3480 -3.1512 16 7 0.3925 8.6733 -4.3960 17 14 0.3849 9.5850 -1.7799 18 1 1.6171 10.3891 -1.5792 19 1 -0.7388 10.4841 -2.1462 20 1 0.0536 8.8652 -0.5239 21 8 1.4321 2.4049 0.0058 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 4.1502 0.6598 -0.0003 26 1 4.5244 3.3354 -0.0017 27 1 2.8764 5.3880 0.5130 28 1 1.1286 5.0516 0.5124 29 1 3.9980 5.8928 -1.5794 30 1 3.6292 4.2077 -2.0186 31 1 3.1641 5.5342 -3.1105 32 1 3.4378 7.6011 -1.4789 33 1 2.7583 7.4054 0.1546 34 1 2.1554 8.6973 -0.9117 35 1 0.0456 9.5554 -4.6019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891933927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:23 Heat of formation + Delta-G solvation = -2.185535 kcal Electronic energy + Delta-G solvation = -17297.238228 eV Core-core repulsion = 14491.515014 eV Total energy + Delta-G solvation = -2805.723214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.47600 -38.44252 -37.45523 -33.18467 -32.58299 -30.75561 -28.89862 -27.61721 -25.91682 -25.27974 -23.29783 -21.77001 -20.39764 -19.35249 -18.44469 -16.80697 -16.63462 -15.71845 -15.36551 -15.03126 -14.64456 -14.19147 -13.98169 -13.12908 -13.10891 -12.96296 -12.65359 -12.26041 -12.16781 -12.03083 -11.55805 -11.45456 -11.24777 -11.07996 -10.87746 -10.30243 -10.06015 -9.68345 -9.53421 -9.10726 -8.60467 -7.81208 -7.39238 -6.07879 -4.06265 1.94361 2.56037 2.78856 3.23704 3.33490 3.36680 3.39298 4.37502 4.82720 4.97197 5.06060 5.11962 5.16254 5.25315 5.33809 5.53197 5.70203 5.83132 6.00254 6.05380 6.13556 6.17898 6.24304 6.26233 6.48308 6.63539 6.67438 6.86396 6.93733 7.13841 7.43070 7.58613 7.85568 7.99330 8.62763 9.00505 9.53521 11.05263 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038173 B = 0.005634 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.329774 B = 4968.609708 C = 5184.369213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.272 6.272 3 C 0.169 3.831 4 C -0.231 4.231 5 C -0.187 4.187 6 C 0.011 3.989 7 C 0.126 3.874 8 N -0.520 5.520 9 C 0.027 3.973 10 C 0.182 3.818 11 H 0.041 0.959 12 C -0.188 4.188 13 C -0.501 4.501 14 H 0.082 0.918 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.268 1.268 21 O -0.194 6.194 22 H 0.104 0.896 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.021 0.979 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 -12.121 10.710 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.187 6.187 3 C 0.075 3.925 4 C -0.251 4.251 5 C -0.207 4.207 6 C -0.039 4.039 7 C -0.002 4.002 8 N -0.244 5.244 9 C -0.122 4.122 10 C 0.074 3.926 11 H 0.058 0.942 12 C -0.247 4.247 13 C -0.539 4.539 14 H 0.100 0.900 15 C -0.132 4.132 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.194 1.194 21 O -0.094 6.094 22 H 0.122 0.878 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.168 0.832 26 H 0.168 0.832 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.010 -12.416 10.330 16.429 hybrid contribution 0.278 1.282 1.033 1.670 sum 3.288 -11.134 11.363 16.245 Atomic orbital electron populations 1.23044 0.77351 1.04151 1.02609 1.86415 1.22566 1.19332 1.90370 1.20325 0.89372 0.78353 1.04414 1.20697 0.92036 0.96689 1.15676 1.21331 0.98044 0.92877 1.08464 1.22208 0.85804 0.89564 1.06293 1.20540 1.02127 0.84300 0.93224 1.62165 1.26543 1.24698 1.10994 1.22396 0.89448 0.99422 1.00885 1.19826 0.92519 0.81761 0.98455 0.94168 1.22853 1.02332 1.01177 0.98342 1.20907 1.42657 0.99375 0.90989 0.89965 1.24911 0.95093 0.97967 0.95234 1.69877 1.44964 1.21155 1.17749 0.86892 0.77029 0.81545 0.82869 1.20728 1.22390 1.19359 1.83944 1.38277 1.14009 1.73203 0.87801 0.92276 0.91861 0.83232 0.83225 0.91955 0.89752 0.96043 0.92877 0.90159 0.92167 0.95263 0.93535 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.76 101.05 1.09 1.32 16 2 O -0.27 -3.66 10.57 -42.16 -0.45 -4.10 16 3 C 0.17 2.59 7.87 29.63 0.23 2.82 16 4 C -0.23 -3.31 10.94 -39.46 -0.43 -3.75 16 5 C -0.19 -2.75 9.29 -39.70 -0.37 -3.12 16 6 C 0.01 0.17 6.23 -35.65 -0.22 -0.05 16 7 C 0.13 2.15 5.06 -4.97 -0.03 2.13 16 8 N -0.52 -10.75 4.69 -237.73 -1.12 -11.86 16 9 C 0.03 0.50 8.58 60.06 0.52 1.02 16 10 C 0.18 4.21 1.90 -68.87 -0.13 4.08 16 11 H 0.04 0.96 6.99 -51.93 -0.36 0.60 16 12 C -0.19 -3.95 7.92 37.16 0.29 -3.66 16 13 C -0.50 -13.87 8.55 -34.44 -0.29 -14.16 16 14 H 0.08 2.51 7.35 -52.49 -0.39 2.12 16 15 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 16 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.89 21.56 24.37 -169.99 -4.14 17.42 16 18 H -0.28 -6.64 6.87 56.52 0.39 -6.26 16 19 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 21 O -0.19 -3.28 10.16 -18.26 -0.19 -3.47 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.15 1.89 8.06 -52.48 -0.42 1.46 16 27 H 0.06 0.96 7.06 -51.93 -0.37 0.59 16 28 H 0.08 1.41 7.93 -51.93 -0.41 0.99 16 29 H 0.02 0.38 6.21 -51.93 -0.32 0.05 16 30 H 0.05 0.91 6.09 -51.93 -0.32 0.60 16 31 H 0.08 1.70 6.86 -51.93 -0.36 1.34 16 32 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 33 H 0.03 0.52 6.91 -51.93 -0.36 0.16 16 34 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 280.66 15.07 4.23 4.23 Total: -1.00 -30.80 280.66 -5.00 -35.80 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.67 Total: -0.08 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 0.56 Total: -11.48 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.34 Total: -38.32 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.63 Total: -7.57 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.80 -5.00 -35.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891933927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.619 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds