Wall clock time and date at job start Sun Mar 29 2020 22:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35773 * 116.99889 * 2 1 4 4 C 1.35128 * 125.83956 * 180.02562 * 3 2 1 5 5 C 1.41452 * 106.78798 * 179.97438 * 4 3 2 6 6 C 1.34440 * 106.89788 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.73911 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47221 * 89.99806 * 7 6 5 9 9 C 1.46896 * 110.99663 * 293.95397 * 8 7 6 10 10 C 1.46894 * 110.99915 * 170.00202 * 8 7 6 11 11 H 1.09002 * 109.47104 * 309.99793 * 10 8 7 12 12 C 1.52997 * 109.47515 * 70.00061 * 10 8 7 13 13 C 1.50708 * 109.46991 * 190.00244 * 10 8 7 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99779 * 179.97438 * 15 13 10 17 17 Si 1.86795 * 120.00284 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47308 * 89.99617 * 17 15 13 19 19 H 1.48501 * 109.47369 * 209.99691 * 17 15 13 20 20 H 1.48502 * 109.47235 * 329.99860 * 17 15 13 21 21 O 1.34332 * 125.83763 * 0.30513 * 3 2 1 22 22 H 1.09003 * 109.47548 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47381 * 300.00112 * 1 2 3 24 24 H 1.09000 * 109.47560 * 60.00399 * 1 2 3 25 25 H 1.07994 * 126.60848 * 359.95790 * 4 3 2 26 26 H 1.08005 * 126.54764 * 180.02562 * 5 4 3 27 27 H 1.08999 * 109.47292 * 329.99849 * 7 6 5 28 28 H 1.08998 * 109.46979 * 209.99784 * 7 6 5 29 29 H 1.08998 * 109.47503 * 296.04235 * 9 8 7 30 30 H 1.09007 * 109.47634 * 56.04710 * 9 8 7 31 31 H 1.09003 * 109.46925 * 176.04443 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99762 * 12 10 8 33 33 H 1.09001 * 109.46832 * 299.99953 * 12 10 8 34 34 H 1.09004 * 109.47261 * 179.97438 * 12 10 8 35 35 H 0.96999 * 119.99874 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3806 1.4174 -0.0005 5 6 3.5761 2.8184 -0.0009 6 6 2.3562 3.3832 -0.0012 7 6 2.0714 4.8631 -0.0011 8 7 1.9793 5.3441 -1.3861 9 6 3.2763 5.2379 -2.0676 10 6 1.4717 6.7218 -1.4322 11 1 0.5659 6.7956 -0.8304 12 6 2.5320 7.6749 -0.8771 13 6 1.1587 7.0944 -2.8586 14 1 1.3211 6.3793 -3.6515 15 6 0.6651 8.3480 -3.1512 16 7 0.3925 8.6733 -4.3960 17 14 0.3849 9.5850 -1.7799 18 1 1.6171 10.3891 -1.5792 19 1 -0.7388 10.4841 -2.1462 20 1 0.0536 8.8652 -0.5239 21 8 1.4321 2.4049 0.0058 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 4.1502 0.6598 -0.0003 26 1 4.5244 3.3354 -0.0017 27 1 2.8764 5.3880 0.5130 28 1 1.1286 5.0516 0.5124 29 1 3.9980 5.8928 -1.5794 30 1 3.6292 4.2077 -2.0186 31 1 3.1641 5.5342 -3.1105 32 1 3.4378 7.6011 -1.4789 33 1 2.7583 7.4054 0.1546 34 1 2.1554 8.6973 -0.9117 35 1 0.0456 9.5554 -4.6019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891933927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:23 Heat of formation + Delta-G solvation = -23.973942 kcal Electronic energy + Delta-G solvation = -17298.183044 eV Core-core repulsion = 14491.515014 eV Total energy + Delta-G solvation = -2806.668030 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.63509 -39.53781 -38.98292 -34.91817 -34.02441 -32.37636 -30.31092 -28.70036 -27.21062 -27.18931 -24.82177 -22.90931 -21.72037 -20.96657 -19.53006 -18.68896 -17.92786 -17.29606 -16.42772 -16.35291 -16.13790 -15.61833 -15.53006 -14.76412 -14.60800 -14.10216 -14.07691 -13.74741 -13.64334 -13.15607 -13.03247 -12.89721 -12.65670 -12.51640 -12.38271 -12.06080 -11.85808 -11.42513 -11.09951 -10.80011 -10.73312 -9.09132 -8.81580 -8.25957 -6.29179 0.75471 1.31977 1.38044 1.47408 1.48048 1.66493 2.33873 2.38617 3.08288 3.35170 3.93028 4.02376 4.21110 4.26175 4.29974 4.41953 4.43284 4.55658 4.60044 4.65868 4.69582 4.74728 4.81496 4.92657 5.00929 5.04583 5.25182 5.44046 5.54141 5.63077 5.83336 6.01879 6.30724 6.39091 6.66688 6.77134 7.35294 8.91167 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038173 B = 0.005634 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.329774 B = 4968.609708 C = 5184.369213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.278 6.278 3 C 0.158 3.842 4 C -0.236 4.236 5 C -0.173 4.173 6 C -0.019 4.019 7 C 0.131 3.869 8 N -0.545 5.545 9 C 0.035 3.965 10 C 0.185 3.815 11 H 0.037 0.963 12 C -0.183 4.183 13 C -0.503 4.503 14 H 0.034 0.966 15 C 0.010 3.990 16 N -0.951 5.951 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.301 1.301 20 H -0.245 1.245 21 O -0.213 6.213 22 H 0.139 0.861 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.173 0.827 26 H 0.173 0.827 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 -12.557 13.339 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.193 6.193 3 C 0.065 3.935 4 C -0.256 4.256 5 C -0.193 4.193 6 C -0.068 4.068 7 C 0.004 3.996 8 N -0.269 5.269 9 C -0.113 4.113 10 C 0.077 3.923 11 H 0.054 0.946 12 C -0.241 4.241 13 C -0.542 4.542 14 H 0.052 0.948 15 C -0.187 4.187 16 N -0.592 5.592 17 Si 0.779 3.221 18 H -0.192 1.192 19 H -0.229 1.229 20 H -0.169 1.169 21 O -0.115 6.115 22 H 0.157 0.843 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.190 0.810 26 H 0.191 0.809 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.068 -12.881 12.982 18.735 hybrid contribution -0.063 1.224 0.151 1.235 sum 4.005 -11.657 13.134 18.011 Atomic orbital electron populations 1.23314 0.75686 1.06396 1.02296 1.86416 1.24274 1.18447 1.90160 1.20745 0.90070 0.78439 1.04275 1.21080 0.92240 0.97221 1.15019 1.21653 0.98281 0.93070 1.06272 1.22201 0.86463 0.89342 1.08744 1.20532 1.03173 0.85003 0.90929 1.61978 1.27664 1.23266 1.13949 1.22280 0.89321 1.00802 0.98872 1.19601 0.93491 0.83996 0.95185 0.94562 1.22713 1.01202 0.99719 1.00511 1.21163 1.41928 0.98428 0.92637 0.94752 1.25797 0.94915 1.00263 0.97711 1.70047 1.46854 1.21909 1.20403 0.85815 0.77197 0.78818 0.80265 1.19157 1.22921 1.16927 1.83907 1.39115 1.14721 1.73713 0.84335 0.91904 0.92851 0.80969 0.80914 0.89424 0.89759 0.94178 0.91118 0.93697 0.92215 0.91390 0.94425 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.76 113.37 1.22 1.54 16 2 O -0.28 -7.06 10.57 -68.88 -0.73 -7.79 16 3 C 0.16 4.62 7.87 67.10 0.53 5.15 16 4 C -0.24 -6.19 10.94 22.35 0.24 -5.95 16 5 C -0.17 -4.58 9.29 22.19 0.21 -4.37 16 6 C -0.02 -0.59 6.23 24.82 0.15 -0.43 16 7 C 0.13 4.16 5.06 85.56 0.43 4.59 16 8 N -0.54 -21.95 4.69 -906.04 -4.25 -26.21 16 9 C 0.04 1.30 8.58 127.69 1.10 2.40 16 10 C 0.19 8.38 1.90 44.17 0.08 8.46 16 11 H 0.04 1.68 6.99 -2.39 -0.02 1.66 16 12 C -0.18 -7.12 7.92 71.98 0.57 -6.55 16 13 C -0.50 -28.56 8.55 25.60 0.22 -28.34 16 14 H 0.03 2.22 7.35 -2.91 -0.02 2.20 16 15 C 0.01 0.57 5.45 84.65 0.46 1.03 16 16 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 17 Si 0.95 44.04 24.37 68.60 1.67 45.72 16 18 H -0.27 -11.60 6.87 99.48 0.68 -10.91 16 19 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 20 H -0.25 -10.36 6.53 99.48 0.65 -9.71 16 21 O -0.21 -7.01 10.16 16.66 0.17 -6.84 16 22 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 26 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 27 H 0.09 2.33 7.06 -2.39 -0.02 2.31 16 28 H 0.08 2.64 7.93 -2.39 -0.02 2.62 16 29 H 0.04 1.32 6.21 -2.39 -0.01 1.30 16 30 H 0.07 2.32 6.09 -2.38 -0.01 2.31 16 31 H 0.04 1.95 6.86 -2.39 -0.02 1.93 16 32 H 0.06 2.31 6.33 -2.39 -0.02 2.29 16 33 H 0.07 2.12 6.91 -2.39 -0.02 2.10 16 34 H 0.04 1.53 3.27 -2.38 -0.01 1.52 16 35 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -68.31 280.66 3.38 -64.93 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.01 Total: 11.96 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 5.22 Total: -22.47 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.95 Total: -85.50 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.56 Total: -14.63 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.67 Total: 45.72 kcal Total: -68.31 3.38 -64.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891933927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.957 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds