Wall clock time and date at job start Sun Mar 29 2020 22:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35772 * 116.99771 * 2 1 4 4 C 1.35133 * 125.84052 * 179.97438 * 3 2 1 5 5 C 1.41446 * 106.79068 * 179.97438 * 4 3 2 6 6 C 1.34446 * 106.89619 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.73755 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47041 * 90.00038 * 7 6 5 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47239 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99798 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00253 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99629 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46921 * 90.00726 * 16 14 12 18 18 H 1.48500 * 109.47163 * 210.00394 * 16 14 12 19 19 H 1.48494 * 109.47628 * 330.00590 * 16 14 12 20 20 O 1.34325 * 125.84308 * 0.30257 * 3 2 1 21 21 H 1.09002 * 109.47196 * 60.00538 * 1 2 3 22 22 H 1.09006 * 109.46960 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47405 * 300.00170 * 1 2 3 24 24 H 1.07989 * 126.60279 * 359.96456 * 4 3 2 25 25 H 1.07997 * 126.55539 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.46924 * 329.99949 * 7 6 5 27 27 H 1.08995 * 109.46962 * 210.00103 * 7 6 5 28 28 H 1.00901 * 111.00121 * 56.04537 * 8 7 6 29 29 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 30 30 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 31 31 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 32 32 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 33 33 H 1.08996 * 109.47261 * 300.00171 * 11 10 9 34 34 H 1.09000 * 109.46870 * 59.99782 * 11 10 9 35 35 H 0.97001 * 120.00663 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3806 1.4175 0.0005 5 6 3.5762 2.8184 -0.0003 6 6 2.3561 3.3832 -0.0007 7 6 2.0713 4.8631 -0.0021 8 7 1.9786 5.3426 -1.3875 9 6 1.7004 6.7845 -1.4281 10 6 1.6105 7.2458 -2.8840 11 6 1.3202 8.7474 -2.9263 12 6 1.2322 9.2019 -4.3604 13 1 1.3692 8.4907 -5.1617 14 6 0.9758 10.5254 -4.6497 15 7 0.8085 11.3912 -3.6741 16 14 0.8660 11.0886 -6.4274 17 1 -0.5376 10.9717 -6.8978 18 1 1.3050 12.5037 -6.5263 19 1 1.7433 10.2380 -7.2712 20 8 1.4322 2.4049 0.0058 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 4.1501 0.6599 0.0015 25 1 4.5243 3.3355 -0.0006 26 1 2.8767 5.3886 0.5111 27 1 1.1289 5.0522 0.5117 28 1 1.2822 4.8257 -1.9032 29 1 0.7551 6.9865 -0.9243 30 1 2.5029 7.3236 -0.9247 31 1 2.5556 7.0438 -3.3882 32 1 0.8078 6.7066 -3.3871 33 1 0.3751 8.9491 -2.4222 34 1 2.1226 9.2869 -2.4231 35 1 0.6284 12.3224 -3.8775 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892929330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:40 Heat of formation + Delta-G solvation = -36.497630 kcal Electronic energy + Delta-G solvation = -16061.388567 eV Core-core repulsion = 13254.177470 eV Total energy + Delta-G solvation = -2807.211098 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.76136 -38.65900 -36.53013 -33.72011 -33.12171 -31.62402 -29.58170 -27.75166 -26.10259 -24.14825 -22.23373 -22.07182 -20.73827 -20.04610 -18.75975 -17.04516 -16.38562 -15.88275 -15.51646 -15.39425 -15.13412 -14.52283 -14.01301 -13.77604 -13.24044 -12.95752 -12.68286 -12.41409 -12.28293 -12.07400 -11.76802 -11.55586 -11.38203 -10.83802 -10.58845 -10.51251 -9.95283 -9.70169 -9.36183 -9.06342 -8.34459 -8.32204 -8.01769 -5.98725 -4.00744 1.63121 2.25528 2.54921 3.10896 3.33233 3.39345 3.43419 4.42898 4.52818 4.72205 4.77073 4.81087 4.88872 5.09445 5.23524 5.37182 5.45040 5.54976 5.72912 5.77234 5.84834 5.91028 6.28634 6.37945 6.66171 6.69408 6.71990 7.11874 7.14689 7.23356 7.51299 7.69276 7.83783 8.01613 8.44928 9.06454 9.63260 11.12755 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.047460 B = 0.003273 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.826470 B = 8553.782242 C = 8749.572259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.270 6.270 3 C 0.175 3.825 4 C -0.232 4.232 5 C -0.159 4.159 6 C -0.020 4.020 7 C 0.143 3.857 8 N -0.687 5.687 9 C 0.058 3.942 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 O -0.205 6.205 21 H 0.061 0.939 22 H 0.106 0.894 23 H 0.059 0.941 24 H 0.153 0.847 25 H 0.156 0.844 26 H 0.104 0.896 27 H 0.043 0.957 28 H 0.341 0.659 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 -19.919 9.831 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.184 6.184 3 C 0.081 3.919 4 C -0.252 4.252 5 C -0.179 4.179 6 C -0.069 4.069 7 C 0.014 3.986 8 N -0.319 5.319 9 C -0.070 4.070 10 C -0.145 4.145 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 O -0.106 6.106 21 H 0.080 0.920 22 H 0.124 0.876 23 H 0.078 0.922 24 H 0.171 0.829 25 H 0.173 0.827 26 H 0.122 0.878 27 H 0.061 0.939 28 H 0.159 0.841 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.467 -19.780 9.805 22.126 hybrid contribution -1.217 0.341 -0.701 1.446 sum 0.250 -19.439 9.104 21.467 Atomic orbital electron populations 1.23065 0.77247 1.04440 1.02430 1.86451 1.22622 1.19135 1.90225 1.20348 0.89397 0.78153 1.03974 1.20815 0.92108 0.96938 1.15349 1.21390 0.98309 0.92640 1.05561 1.22085 0.86252 0.89288 1.09245 1.20345 1.01910 0.84327 0.92033 1.60664 1.54570 1.05606 1.11032 1.22183 0.99141 0.85635 1.00020 1.21633 1.00900 0.99623 0.92380 1.19066 0.96802 0.88651 0.97034 1.21262 1.48217 0.93754 0.92513 0.92648 1.25030 0.95437 0.96897 0.97171 1.69960 1.49237 1.03123 1.31322 0.86590 0.78280 0.77882 0.85235 1.20718 1.21233 1.19826 1.83887 1.38515 1.14309 1.73905 0.92029 0.87563 0.92215 0.82915 0.82671 0.87793 0.93860 0.84147 0.95457 0.91059 0.92392 0.93620 0.96789 0.96489 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.76 101.05 1.09 1.26 16 2 O -0.27 -2.97 10.57 -42.16 -0.45 -3.41 16 3 C 0.17 2.19 7.87 29.63 0.23 2.43 16 4 C -0.23 -2.77 10.94 -39.47 -0.43 -3.21 16 5 C -0.16 -1.92 10.80 -39.70 -0.43 -2.35 16 6 C -0.02 -0.26 6.83 -35.65 -0.24 -0.51 16 7 C 0.14 1.77 6.21 -4.97 -0.03 1.74 16 8 N -0.69 -10.15 6.49 -115.06 -0.75 -10.90 16 9 C 0.06 0.98 5.68 -3.82 -0.02 0.96 16 10 C -0.11 -2.23 5.41 -26.74 -0.14 -2.37 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 O -0.21 -2.71 10.16 -18.21 -0.19 -2.90 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 25 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.34 4.96 8.72 -39.29 -0.34 4.62 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -31.44 305.87 -6.96 -38.41 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.38 Total: -0.92 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.53 Total: -15.29 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.01 Total: -37.31 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.63 Total: -6.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.44 -6.96 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892929330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.908 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds