Wall clock time and date at job start Sun Mar 29 2020 22:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35772 * 116.99771 * 2 1 4 4 C 1.35133 * 125.84052 * 179.97438 * 3 2 1 5 5 C 1.41446 * 106.79068 * 179.97438 * 4 3 2 6 6 C 1.34446 * 106.89619 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.73755 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47041 * 90.00038 * 7 6 5 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47239 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99798 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00253 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99629 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46921 * 90.00726 * 16 14 12 18 18 H 1.48500 * 109.47163 * 210.00394 * 16 14 12 19 19 H 1.48494 * 109.47628 * 330.00590 * 16 14 12 20 20 O 1.34325 * 125.84308 * 0.30257 * 3 2 1 21 21 H 1.09002 * 109.47196 * 60.00538 * 1 2 3 22 22 H 1.09006 * 109.46960 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47405 * 300.00170 * 1 2 3 24 24 H 1.07989 * 126.60279 * 359.96456 * 4 3 2 25 25 H 1.07997 * 126.55539 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.46924 * 329.99949 * 7 6 5 27 27 H 1.08995 * 109.46962 * 210.00103 * 7 6 5 28 28 H 1.00901 * 111.00121 * 56.04537 * 8 7 6 29 29 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 30 30 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 31 31 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 32 32 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 33 33 H 1.08996 * 109.47261 * 300.00171 * 11 10 9 34 34 H 1.09000 * 109.46870 * 59.99782 * 11 10 9 35 35 H 0.97001 * 120.00663 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3806 1.4175 0.0005 5 6 3.5762 2.8184 -0.0003 6 6 2.3561 3.3832 -0.0007 7 6 2.0713 4.8631 -0.0021 8 7 1.9786 5.3426 -1.3875 9 6 1.7004 6.7845 -1.4281 10 6 1.6105 7.2458 -2.8840 11 6 1.3202 8.7474 -2.9263 12 6 1.2322 9.2019 -4.3604 13 1 1.3692 8.4907 -5.1617 14 6 0.9758 10.5254 -4.6497 15 7 0.8085 11.3912 -3.6741 16 14 0.8660 11.0886 -6.4274 17 1 -0.5376 10.9717 -6.8978 18 1 1.3050 12.5037 -6.5263 19 1 1.7433 10.2380 -7.2712 20 8 1.4322 2.4049 0.0058 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 4.1501 0.6599 0.0015 25 1 4.5243 3.3355 -0.0006 26 1 2.8767 5.3886 0.5111 27 1 1.1289 5.0522 0.5117 28 1 1.2822 4.8257 -1.9032 29 1 0.7551 6.9865 -0.9243 30 1 2.5029 7.3236 -0.9247 31 1 2.5556 7.0438 -3.3882 32 1 0.8078 6.7066 -3.3871 33 1 0.3751 8.9491 -2.4222 34 1 2.1226 9.2869 -2.4231 35 1 0.6284 12.3224 -3.8775 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892929330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:39 Heat of formation + Delta-G solvation = -56.675207 kcal Electronic energy + Delta-G solvation = -16062.263533 eV Core-core repulsion = 13254.177470 eV Total energy + Delta-G solvation = -2808.086063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.68215 -39.45766 -37.84463 -35.56780 -34.16971 -33.32807 -30.80502 -28.74718 -27.56647 -25.46339 -23.80656 -23.00185 -22.06572 -21.39026 -19.61884 -18.49336 -17.92491 -17.10420 -16.56931 -16.49299 -16.27532 -15.99757 -15.28334 -15.21536 -14.40736 -14.09370 -13.88173 -13.78225 -13.41928 -13.36026 -12.97404 -12.93174 -12.60530 -12.47421 -12.45443 -12.23508 -11.52693 -11.39960 -11.14034 -10.84527 -10.54378 -9.49457 -8.96073 -8.19592 -6.30323 0.68362 1.38168 1.40795 1.42021 1.53478 1.63314 2.32921 2.41874 3.13620 3.31474 3.79241 3.99257 4.18476 4.23843 4.24739 4.28037 4.41146 4.55187 4.58496 4.72086 4.73555 4.85950 4.98602 5.01737 5.10085 5.24811 5.49789 5.52951 5.76422 5.77608 5.87094 5.95393 6.25443 6.27739 6.33462 6.86716 7.38848 8.92260 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.047460 B = 0.003273 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.826470 B = 8553.782242 C = 8749.572259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.278 6.278 3 C 0.165 3.835 4 C -0.242 4.242 5 C -0.158 4.158 6 C -0.038 4.038 7 C 0.146 3.854 8 N -0.689 5.689 9 C 0.072 3.928 10 C -0.094 4.094 11 C 0.025 3.975 12 C -0.544 4.544 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.264 1.264 20 O -0.215 6.215 21 H 0.059 0.941 22 H 0.136 0.864 23 H 0.062 0.938 24 H 0.170 0.830 25 H 0.171 0.829 26 H 0.119 0.881 27 H 0.050 0.950 28 H 0.342 0.658 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.048 0.952 33 H -0.008 1.008 34 H -0.005 1.005 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -20.966 9.366 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.193 6.193 3 C 0.072 3.928 4 C -0.262 4.262 5 C -0.178 4.178 6 C -0.086 4.086 7 C 0.018 3.982 8 N -0.321 5.321 9 C -0.057 4.057 10 C -0.132 4.132 11 C -0.012 4.012 12 C -0.582 4.582 13 H 0.076 0.924 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.188 1.188 20 O -0.117 6.117 21 H 0.077 0.923 22 H 0.154 0.846 23 H 0.081 0.919 24 H 0.188 0.812 25 H 0.189 0.811 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.160 0.840 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.011 0.989 34 H 0.013 0.987 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.631 -20.850 9.347 22.907 hybrid contribution -1.291 0.599 -0.513 1.513 sum 0.339 -20.251 8.834 22.096 Atomic orbital electron populations 1.23345 0.75508 1.06499 1.02455 1.86448 1.24432 1.18379 1.90051 1.20671 0.89919 0.78389 1.03843 1.21142 0.92476 0.97413 1.15136 1.21680 0.98742 0.92881 1.04484 1.22160 0.86576 0.89348 1.10487 1.20375 1.02862 0.84383 0.90578 1.60587 1.54529 1.04138 1.12809 1.21884 0.99432 0.87182 0.97172 1.21385 1.00555 0.96073 0.95195 1.18968 0.94813 0.91992 0.95470 1.21717 1.48341 0.94342 0.93831 0.92362 1.25978 0.94842 0.97032 1.02018 1.70085 1.49943 1.03572 1.33770 0.85452 0.78714 0.77488 0.79431 1.19767 1.20657 1.18822 1.83865 1.38971 1.14695 1.74181 0.92253 0.84555 0.91931 0.81228 0.81102 0.86333 0.93204 0.84036 0.95280 0.90808 0.92818 0.93371 0.98940 0.98676 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.76 113.37 1.22 1.43 16 2 O -0.28 -5.79 10.57 -68.88 -0.73 -6.52 16 3 C 0.17 3.98 7.87 67.10 0.53 4.51 16 4 C -0.24 -5.44 10.94 22.34 0.24 -5.20 16 5 C -0.16 -3.57 10.80 22.19 0.24 -3.33 16 6 C -0.04 -0.92 6.83 24.82 0.17 -0.75 16 7 C 0.15 3.40 6.21 85.56 0.53 3.94 16 8 N -0.69 -19.45 6.49 -517.93 -3.36 -22.81 16 9 C 0.07 2.37 5.68 86.30 0.49 2.86 16 10 C -0.09 -3.88 5.41 30.59 0.17 -3.72 16 11 C 0.03 1.33 4.97 29.85 0.15 1.48 16 12 C -0.54 -31.41 9.11 25.60 0.23 -31.17 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 15 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 16 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 20 O -0.22 -5.51 10.16 16.82 0.17 -5.33 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.17 3.07 8.06 -2.92 -0.02 3.05 16 25 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.34 9.55 8.72 -89.69 -0.78 8.77 16 29 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.65 305.87 3.11 -63.54 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.28 Total: 10.85 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.43 Total: -29.54 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -3.08 Total: -79.62 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.56 Total: -11.85 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.65 3.11 -63.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892929330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.867 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds