Wall clock time and date at job start Sun Mar 29 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47060 * 2 1 4 4 C 1.35772 * 116.99771 * 179.97438 * 3 2 1 5 5 C 1.35133 * 125.84052 * 179.97438 * 4 3 2 6 6 C 1.41446 * 106.79068 * 179.97438 * 5 4 3 7 7 C 1.34446 * 106.89619 * 0.02562 * 6 5 4 8 8 C 1.50704 * 125.73755 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47041 * 90.00038 * 8 7 6 10 10 C 1.46906 * 110.99888 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47429 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47086 * 59.99960 * 16 14 12 18 18 H 1.48503 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99904 * 16 14 12 20 20 O 1.34325 * 125.84308 * 0.30257 * 4 3 2 21 21 H 1.08995 * 109.47296 * 300.00594 * 1 2 3 22 22 H 1.09002 * 109.46671 * 60.00224 * 1 2 3 23 23 H 1.09000 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47157 * 239.99670 * 2 1 3 25 25 H 1.09002 * 109.46671 * 119.99776 * 2 1 3 26 26 H 1.07989 * 126.60279 * 359.96456 * 5 4 3 27 27 H 1.07997 * 126.55539 * 180.02562 * 6 5 4 28 28 H 1.08997 * 109.46924 * 329.99949 * 8 7 6 29 29 H 1.08995 * 109.46962 * 210.00103 * 8 7 6 30 30 H 1.00901 * 111.00121 * 56.04537 * 9 8 7 31 31 H 1.09004 * 109.47040 * 299.99934 * 10 9 8 32 32 H 1.09000 * 109.47033 * 59.99886 * 10 9 8 33 33 H 1.09004 * 109.46862 * 299.99897 * 11 10 9 34 34 H 1.09004 * 109.46998 * 59.99419 * 11 10 9 35 35 H 0.97000 * 120.00540 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5251 0.0005 5 6 3.9933 2.7148 0.0001 6 6 5.3793 2.4322 0.0016 7 6 5.5052 1.0937 0.0022 8 6 6.8055 0.3319 0.0043 9 7 7.2260 0.0848 1.3899 10 6 8.4927 -0.6580 1.4311 11 6 8.8971 -0.8964 2.8873 12 6 10.1962 -1.6589 2.9296 13 1 10.6848 -1.9446 2.0098 14 6 10.7615 -1.9910 4.1424 15 7 10.1668 -1.6427 5.2625 16 14 12.3722 -2.9357 4.1948 17 1 13.4295 -2.1498 3.5094 18 1 12.7646 -3.1671 5.6083 19 1 12.2027 -4.2416 3.5085 20 8 4.2748 0.5487 -0.0047 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.5355 3.6928 -0.0012 27 1 6.1828 3.1538 0.0021 28 1 7.5695 0.9160 -0.5087 29 1 6.6698 -0.6198 -0.5094 30 1 6.5063 -0.3994 1.9054 31 1 8.3683 -1.6167 0.9274 32 1 9.2687 -0.0812 0.9279 33 1 9.0214 0.0621 3.3914 34 1 8.1209 -1.4734 3.3901 35 1 10.5642 -1.8766 6.1158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893514749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:01 Heat of formation + Delta-G solvation = -36.137157 kcal Electronic energy + Delta-G solvation = -16177.646222 eV Core-core repulsion = 13370.450755 eV Total energy + Delta-G solvation = -2807.195466 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.60842 -38.70002 -36.08696 -33.25752 -32.95920 -31.97816 -30.43426 -28.07989 -25.13385 -23.69735 -22.99093 -21.76271 -20.72427 -20.28656 -18.73726 -17.03791 -16.33132 -15.73347 -15.46414 -15.15351 -14.86802 -14.42249 -13.85852 -13.48656 -13.04067 -12.93594 -12.83719 -12.60757 -12.24093 -12.17785 -11.95975 -11.72539 -11.15792 -11.08392 -10.92089 -10.57781 -10.02648 -9.81053 -9.43840 -9.18754 -8.36049 -8.02449 -7.80456 -6.00080 -4.03223 1.79412 2.37669 2.70166 3.17001 3.33299 3.37746 3.39945 4.43632 4.60313 4.63901 4.81860 4.94636 4.96658 5.02290 5.21537 5.35696 5.43988 5.45470 5.63960 5.66498 5.76184 5.89868 6.05691 6.27003 6.32477 6.53952 6.83513 6.93170 7.30075 7.37641 7.69160 7.76254 7.89240 8.06143 8.41362 9.03795 9.60565 11.11299 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.003594 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.878389 B = 7788.095181 C = 8124.332967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.270 6.270 4 C 0.175 3.825 5 C -0.232 4.232 6 C -0.162 4.162 7 C -0.016 4.016 8 C 0.142 3.858 9 N -0.687 5.687 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 O -0.205 6.205 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.340 0.660 31 H 0.018 0.982 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.014 0.986 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.056 4.754 -12.030 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.185 6.185 4 C 0.082 3.918 5 C -0.252 4.252 6 C -0.182 4.182 7 C -0.065 4.065 8 C 0.013 3.987 9 N -0.319 5.319 10 C -0.063 4.063 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 O -0.106 6.106 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.170 0.830 27 H 0.173 0.827 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.157 0.843 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.937 5.180 -11.772 20.479 hybrid contribution 0.502 -1.496 -0.089 1.580 sum -15.435 3.684 -11.860 19.811 Atomic orbital electron populations 1.21784 0.92221 1.03199 1.03609 1.22805 0.96166 0.81130 1.02463 1.86441 1.12489 1.29353 1.90229 1.20273 0.80491 0.86930 1.04118 1.20788 0.92725 0.96214 1.15502 1.21368 0.95969 0.94931 1.05934 1.22177 0.82710 0.92889 1.08686 1.20359 0.87987 0.97666 0.92671 1.60707 1.07001 1.53964 1.10205 1.22221 0.88563 0.93717 1.01772 1.19066 0.95886 0.97362 0.88894 1.21128 1.06947 1.35881 0.92287 0.92733 1.25007 0.97570 0.96066 0.95712 1.69963 1.39307 1.46570 0.97360 0.86633 0.83902 0.80363 0.76937 1.20181 1.21262 1.20294 1.83893 1.15889 1.36968 1.73897 0.91295 0.91431 0.90038 0.91653 0.91399 0.83035 0.82740 0.88058 0.94233 0.84276 0.96354 0.91933 0.95504 0.96780 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.47 6.41 37.16 0.24 0.71 16 3 O -0.27 -3.38 10.21 -42.16 -0.43 -3.81 16 4 C 0.18 2.48 7.87 29.63 0.23 2.71 16 5 C -0.23 -3.13 10.94 -39.47 -0.43 -3.56 16 6 C -0.16 -2.24 10.80 -39.70 -0.43 -2.67 16 7 C -0.02 -0.24 6.83 -35.65 -0.24 -0.49 16 8 C 0.14 2.11 6.21 -4.97 -0.03 2.08 16 9 N -0.69 -12.48 6.49 -115.06 -0.75 -13.23 16 10 C 0.06 1.35 5.62 -3.82 -0.02 1.33 16 11 C 0.03 0.66 5.23 -27.89 -0.15 0.52 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 O -0.21 -3.09 10.16 -18.21 -0.19 -3.28 16 21 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 28 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.34 6.20 8.72 -39.29 -0.34 5.86 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -31.15 306.23 -7.27 -38.42 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.38 Total: 0.58 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.86 Total: -13.62 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.01 Total: -39.54 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.62 Total: -7.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.15 -7.27 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893514749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.281 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds