Wall clock time and date at job start Sun Mar 29 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47060 * 2 1 4 4 C 1.35772 * 116.99771 * 179.97438 * 3 2 1 5 5 C 1.35133 * 125.84052 * 179.97438 * 4 3 2 6 6 C 1.41446 * 106.79068 * 179.97438 * 5 4 3 7 7 C 1.34446 * 106.89619 * 0.02562 * 6 5 4 8 8 C 1.50704 * 125.73755 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47041 * 90.00038 * 8 7 6 10 10 C 1.46906 * 110.99888 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47378 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47429 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47086 * 59.99960 * 16 14 12 18 18 H 1.48503 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99904 * 16 14 12 20 20 O 1.34325 * 125.84308 * 0.30257 * 4 3 2 21 21 H 1.08995 * 109.47296 * 300.00594 * 1 2 3 22 22 H 1.09002 * 109.46671 * 60.00224 * 1 2 3 23 23 H 1.09000 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47157 * 239.99670 * 2 1 3 25 25 H 1.09002 * 109.46671 * 119.99776 * 2 1 3 26 26 H 1.07989 * 126.60279 * 359.96456 * 5 4 3 27 27 H 1.07997 * 126.55539 * 180.02562 * 6 5 4 28 28 H 1.08997 * 109.46924 * 329.99949 * 8 7 6 29 29 H 1.08995 * 109.46962 * 210.00103 * 8 7 6 30 30 H 1.00901 * 111.00121 * 56.04537 * 9 8 7 31 31 H 1.09004 * 109.47040 * 299.99934 * 10 9 8 32 32 H 1.09000 * 109.47033 * 59.99886 * 10 9 8 33 33 H 1.09004 * 109.46862 * 299.99897 * 11 10 9 34 34 H 1.09004 * 109.46998 * 59.99419 * 11 10 9 35 35 H 0.97000 * 120.00540 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5251 0.0005 5 6 3.9933 2.7148 0.0001 6 6 5.3793 2.4322 0.0016 7 6 5.5052 1.0937 0.0022 8 6 6.8055 0.3319 0.0043 9 7 7.2260 0.0848 1.3899 10 6 8.4927 -0.6580 1.4311 11 6 8.8971 -0.8964 2.8873 12 6 10.1962 -1.6589 2.9296 13 1 10.6848 -1.9446 2.0098 14 6 10.7615 -1.9910 4.1424 15 7 10.1668 -1.6427 5.2625 16 14 12.3722 -2.9357 4.1948 17 1 13.4295 -2.1498 3.5094 18 1 12.7646 -3.1671 5.6083 19 1 12.2027 -4.2416 3.5085 20 8 4.2748 0.5487 -0.0047 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.5355 3.6928 -0.0012 27 1 6.1828 3.1538 0.0021 28 1 7.5695 0.9160 -0.5087 29 1 6.6698 -0.6198 -0.5094 30 1 6.5063 -0.3994 1.9054 31 1 8.3683 -1.6167 0.9274 32 1 9.2687 -0.0812 0.9279 33 1 9.0214 0.0621 3.3914 34 1 8.1209 -1.4734 3.3901 35 1 10.5642 -1.8766 6.1158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893514749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:01 Heat of formation + Delta-G solvation = -55.970702 kcal Electronic energy + Delta-G solvation = -16178.506269 eV Core-core repulsion = 13370.450755 eV Total energy + Delta-G solvation = -2808.055513 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.68543 -39.63101 -37.61290 -35.13528 -34.16184 -32.89866 -31.96222 -29.58102 -26.69080 -24.99621 -24.11752 -22.79427 -22.48440 -21.44317 -19.73473 -18.51969 -18.01373 -17.11064 -16.52041 -16.41525 -16.27451 -15.83526 -15.32620 -14.69255 -14.33949 -14.15065 -13.84285 -13.72427 -13.64898 -13.37864 -13.13194 -12.94882 -12.77163 -12.59599 -12.43585 -11.93061 -11.91092 -11.44060 -11.32506 -10.84327 -10.55502 -9.41877 -8.95287 -8.19452 -6.31433 0.68633 1.36475 1.41749 1.45094 1.52964 1.63396 2.23305 2.41797 3.14064 3.43481 3.80457 3.91586 3.96442 4.01453 4.22422 4.29008 4.47498 4.52967 4.61156 4.63937 4.83503 4.85361 4.88144 5.01372 5.06466 5.15869 5.43876 5.50530 5.66009 5.76683 5.79880 6.07958 6.20821 6.27509 6.39688 6.86075 7.38073 8.92605 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.003594 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.878389 B = 7788.095181 C = 8124.332967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.040 3.960 3 O -0.276 6.276 4 C 0.167 3.833 5 C -0.240 4.240 6 C -0.159 4.159 7 C -0.037 4.037 8 C 0.147 3.853 9 N -0.695 5.695 10 C 0.083 3.917 11 C 0.030 3.970 12 C -0.545 4.545 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.266 1.266 20 O -0.217 6.217 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.172 0.828 27 H 0.172 0.828 28 H 0.119 0.881 29 H 0.049 0.951 30 H 0.336 0.664 31 H 0.025 0.975 32 H 0.070 0.930 33 H -0.005 1.005 34 H -0.012 1.012 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.889 4.565 -13.290 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.191 6.191 4 C 0.073 3.927 5 C -0.260 4.260 6 C -0.179 4.179 7 C -0.085 4.085 8 C 0.019 3.981 9 N -0.326 5.326 10 C -0.045 4.045 11 C -0.007 4.007 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.191 1.191 20 O -0.118 6.118 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.120 0.880 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.189 0.811 27 H 0.189 0.811 28 H 0.137 0.863 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.013 0.987 34 H 0.007 0.993 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.784 4.996 -13.057 21.085 hybrid contribution 0.339 -1.405 0.301 1.476 sum -15.444 3.591 -12.757 20.351 Atomic orbital electron populations 1.21812 0.89910 1.04647 1.03832 1.23084 0.97992 0.79898 1.02409 1.86450 1.11604 1.31067 1.90027 1.20609 0.81068 0.87089 1.03915 1.21124 0.92705 0.96984 1.15137 1.21675 0.96706 0.94898 1.04588 1.22201 0.82670 0.93336 1.10324 1.20382 0.88626 0.98515 0.90581 1.60620 1.06056 1.53249 1.12658 1.21843 0.90098 0.94613 0.97943 1.18927 0.94823 0.94984 0.91989 1.21602 1.07839 1.36034 0.92880 0.91726 1.26008 1.01597 0.97038 0.95253 1.70110 1.41272 1.47891 0.98067 0.85453 0.79029 0.79133 0.77132 1.18981 1.20984 1.19085 1.83867 1.16183 1.37593 1.74205 0.91326 0.90920 0.87955 0.91271 0.91928 0.81086 0.81098 0.86279 0.93313 0.84650 0.95666 0.91115 0.98670 0.99334 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.04 0.74 6.41 71.98 0.46 1.20 16 3 O -0.28 -6.71 10.21 -68.88 -0.70 -7.41 16 4 C 0.17 4.60 7.87 67.10 0.53 5.13 16 5 C -0.24 -6.16 10.94 22.34 0.24 -5.91 16 6 C -0.16 -4.18 10.80 22.19 0.24 -3.94 16 7 C -0.04 -1.07 6.83 24.82 0.17 -0.90 16 8 C 0.15 4.16 6.21 85.56 0.53 4.69 16 9 N -0.69 -24.94 6.49 -517.93 -3.36 -28.30 16 10 C 0.08 3.42 5.62 86.30 0.49 3.91 16 11 C 0.03 1.62 5.23 29.84 0.16 1.77 16 12 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 15 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 16 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 O -0.22 -6.42 10.16 16.82 0.17 -6.25 16 21 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.17 3.56 8.06 -2.92 -0.02 3.54 16 27 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.12 2.92 8.14 -2.39 -0.02 2.91 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.34 12.39 8.72 -89.69 -0.78 11.61 16 31 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.58 306.23 2.95 -63.63 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.28 Total: 14.79 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.25 Total: -25.42 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -3.08 Total: -85.47 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.53 Total: -13.67 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -66.58 2.95 -63.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893514749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.659 kcal (2) G-P(sol) polarization free energy of solvation -66.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds