Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.98997 * 2 1 4 4 C 1.54950 * 111.12427 * 235.80529 * 2 1 3 5 5 O 1.43651 * 105.13630 * 205.63625 * 4 2 1 6 6 C 1.43241 * 109.96983 * 24.42726 * 5 4 2 7 7 H 1.09002 * 109.82871 * 238.77471 * 6 5 4 8 8 C 1.50701 * 109.83076 * 117.89485 * 6 5 4 9 9 O 1.21283 * 119.99959 * 356.57940 * 8 6 5 10 10 N 1.34779 * 120.00084 * 176.58976 * 8 6 5 11 11 C 1.47067 * 136.05473 * 359.62343 * 10 8 6 12 12 C 1.53757 * 87.88618 * 152.96934 * 11 10 8 13 13 C 1.50702 * 114.08938 * 139.78064 * 12 11 10 14 14 H 1.07995 * 119.99744 * 266.56217 * 13 12 11 15 15 C 1.37869 * 119.99838 * 86.55870 * 13 12 11 16 16 N 1.31515 * 120.00061 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00232 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46983 * 90.00248 * 17 15 13 19 19 H 1.48505 * 109.47066 * 210.00015 * 17 15 13 20 20 H 1.48495 * 109.47383 * 329.99857 * 17 15 13 21 21 C 1.47064 * 136.05782 * 179.97438 * 10 8 6 22 22 C 1.54386 * 107.58949 * 358.28930 * 6 5 4 23 23 H 1.09010 * 109.47151 * 182.74306 * 1 2 3 24 24 H 1.09001 * 109.47512 * 302.74165 * 1 2 3 25 25 H 1.09005 * 109.47143 * 62.74123 * 1 2 3 26 26 H 1.08992 * 110.31012 * 86.72111 * 4 2 1 27 27 H 1.09000 * 110.39363 * 324.59003 * 4 2 1 28 28 H 1.08999 * 113.46537 * 267.69909 * 11 10 8 29 29 H 1.09000 * 113.46795 * 38.13564 * 11 10 8 30 30 H 1.08999 * 114.56946 * 272.66494 * 12 11 10 31 31 H 0.97001 * 120.00653 * 180.02562 * 16 15 13 32 32 H 1.09001 * 113.46648 * 321.85883 * 21 10 8 33 33 H 1.09003 * 113.46678 * 92.24128 * 21 10 8 34 34 H 1.09000 * 110.84933 * 96.83529 * 22 6 5 35 35 H 1.09001 * 110.84623 * 220.45575 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9204 1.0177 0.0000 4 6 2.0884 -0.8123 -1.1955 5 8 3.3897 -1.2520 -0.7751 6 6 3.4509 -1.3015 0.6552 7 1 4.2465 -0.6484 1.0140 8 6 3.7079 -2.7159 1.1073 9 8 3.7663 -3.6120 0.2920 10 7 3.8724 -2.9852 2.4176 11 6 3.8794 -2.2074 3.6657 12 6 3.4253 -3.4821 4.3958 13 6 4.0858 -3.6931 5.7338 14 1 4.9781 -4.2972 5.8062 15 6 3.5510 -3.1150 6.8654 16 7 4.1277 -3.2987 8.0330 17 14 2.0080 -2.0695 6.7400 18 1 0.8110 -2.9306 6.9159 19 1 2.0284 -1.0280 7.7985 20 1 1.9581 -1.4187 5.4062 21 6 4.1302 -4.1852 3.2278 22 6 2.0897 -0.8153 1.1975 23 1 -0.3634 -1.0266 0.0492 24 1 -0.3634 0.5558 0.8644 25 1 -0.3634 0.4707 -0.9136 26 1 2.1702 -0.1784 -2.0783 27 1 1.4485 -1.6697 -1.4041 28 1 4.8727 -1.8689 3.9606 29 1 3.1387 -1.4080 3.6832 30 1 2.3457 -3.6302 4.4201 31 1 3.7513 -2.8922 8.8292 32 1 3.6030 -5.0705 2.8722 33 1 5.1897 -4.3690 3.4063 34 1 1.4405 -1.6596 1.4292 35 1 2.2255 -0.1777 2.0711 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898674368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = -49.454416 kcal Electronic energy + Delta-G solvation = -17487.154107 eV Core-core repulsion = 14679.381161 eV Total energy + Delta-G solvation = -2807.772946 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31124 -38.90265 -36.92757 -33.69908 -32.69869 -30.98662 -29.02011 -26.54986 -25.49250 -25.14192 -23.03299 -20.90415 -20.06800 -18.32956 -17.44836 -17.06917 -16.35206 -15.66536 -15.42637 -14.93541 -14.28562 -13.94949 -13.60029 -13.31229 -13.20360 -13.03398 -12.61539 -12.26499 -11.88648 -11.73809 -11.61561 -11.38808 -11.13263 -10.89216 -10.84822 -10.70610 -10.15527 -10.10629 -9.73603 -9.34093 -8.93039 -8.69094 -8.06592 -6.24628 -4.27443 2.94192 3.16317 3.21284 3.25661 3.27981 3.88941 4.25860 4.26331 4.56648 4.69188 4.91352 4.99161 5.01781 5.19135 5.25177 5.41932 5.54269 5.63065 5.68774 5.71478 5.76133 5.85402 5.92533 6.05037 6.11175 6.21200 6.28438 6.38082 6.48876 6.88875 7.09965 7.50679 8.27821 8.36445 8.62012 8.79444 9.36096 10.87420 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.007039 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.793792 B = 3976.868143 C = 4696.133054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 H 0.089 0.911 4 C 0.053 3.947 5 O -0.354 6.354 6 C 0.072 3.928 7 H 0.103 0.897 8 C 0.521 3.479 9 O -0.545 6.545 10 N -0.644 5.644 11 C 0.083 3.917 12 C -0.006 4.006 13 C -0.513 4.513 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.891 5.891 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.261 1.261 21 C 0.115 3.885 22 C -0.140 4.140 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 8.807 -12.032 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 H 0.108 0.892 4 C -0.024 4.024 5 O -0.272 6.272 6 C 0.011 3.989 7 H 0.121 0.879 8 C 0.309 3.691 9 O -0.423 6.423 10 N -0.380 5.380 11 C -0.040 4.040 12 C -0.025 4.025 13 C -0.551 4.551 14 H 0.098 0.902 15 C -0.127 4.127 16 N -0.528 5.528 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.185 1.185 21 C -0.007 4.007 22 C -0.178 4.178 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.211 8.370 -12.645 16.387 hybrid contribution -0.845 0.706 0.294 1.139 sum -7.056 9.076 -12.351 16.873 Atomic orbital electron populations 1.21672 0.93477 1.02508 1.02182 1.22886 0.97076 0.99981 0.94663 0.89222 1.23521 0.84536 0.97344 0.96986 1.88493 1.31776 1.88339 1.18576 1.22525 0.99526 0.94141 0.82709 0.87905 1.20412 0.77417 0.90721 0.80539 1.90656 1.52141 1.47650 1.51829 1.49963 1.69284 1.14685 1.04076 1.24031 1.01410 0.98388 0.80187 1.20783 0.96733 0.91171 0.93840 1.20773 1.12852 1.32853 0.88604 0.90187 1.25011 0.96876 0.95703 0.95089 1.69890 1.40191 1.43932 0.98774 0.86891 0.83824 0.80645 0.78385 1.20164 1.21242 1.18517 1.23104 1.00845 0.88688 0.88085 1.23179 0.94911 1.00727 0.98975 0.92163 0.91964 0.92139 0.89465 0.91963 0.89616 0.92300 0.92160 0.92333 0.92058 0.90125 0.89828 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.31 37.16 0.35 -0.87 16 2 C -0.13 -1.31 3.69 -88.37 -0.33 -1.64 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.05 0.63 7.26 38.19 0.28 0.91 16 5 O -0.35 -5.75 10.56 -54.88 -0.58 -6.33 16 6 C 0.07 1.12 3.78 -27.16 -0.10 1.02 16 7 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 8 C 0.52 10.19 7.28 -10.98 -0.08 10.11 16 9 O -0.54 -12.67 17.30 -14.10 -0.24 -12.91 16 10 N -0.64 -12.44 3.67 -185.06 -0.68 -13.12 16 11 C 0.08 1.55 7.26 -8.37 -0.06 1.49 16 12 C -0.01 -0.12 2.97 -91.13 -0.27 -0.39 16 13 C -0.51 -13.04 9.37 -34.44 -0.32 -13.36 16 14 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 15 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.89 -25.32 13.96 55.43 0.77 -24.55 16 17 Si 0.88 19.37 27.15 -169.99 -4.61 14.76 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.26 -5.26 5.72 56.52 0.32 -4.94 16 21 C 0.11 2.29 8.17 -8.52 -0.07 2.22 16 22 C -0.14 -1.79 5.40 -24.78 -0.13 -1.92 16 23 H 0.06 0.55 8.10 -51.92 -0.42 0.13 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 28 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 29 H 0.06 1.02 6.14 -51.93 -0.32 0.70 16 30 H 0.06 1.29 7.03 -51.93 -0.37 0.92 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 34 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 35 H 0.09 1.06 7.59 -51.93 -0.39 0.67 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -30.69 288.56 -7.17 -37.86 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.33 Total: 0.46 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.84 Total: -0.51 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.09 Total: -37.67 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.82 Total: -19.24 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.61 Total: 14.76 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.69 -7.17 -37.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898674368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.599 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds