Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.98997 * 2 1 4 4 C 1.54950 * 111.12427 * 235.80529 * 2 1 3 5 5 O 1.43651 * 105.13630 * 205.63625 * 4 2 1 6 6 C 1.43241 * 109.96983 * 24.42726 * 5 4 2 7 7 H 1.09002 * 109.82871 * 238.77471 * 6 5 4 8 8 C 1.50701 * 109.83076 * 117.89485 * 6 5 4 9 9 O 1.21283 * 119.99959 * 356.57940 * 8 6 5 10 10 N 1.34779 * 120.00084 * 176.58976 * 8 6 5 11 11 C 1.47067 * 136.05473 * 359.62343 * 10 8 6 12 12 C 1.53757 * 87.88618 * 152.96934 * 11 10 8 13 13 C 1.50702 * 114.08938 * 139.78064 * 12 11 10 14 14 H 1.07995 * 119.99744 * 266.56217 * 13 12 11 15 15 C 1.37869 * 119.99838 * 86.55870 * 13 12 11 16 16 N 1.31515 * 120.00061 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00232 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46983 * 90.00248 * 17 15 13 19 19 H 1.48505 * 109.47066 * 210.00015 * 17 15 13 20 20 H 1.48495 * 109.47383 * 329.99857 * 17 15 13 21 21 C 1.47064 * 136.05782 * 179.97438 * 10 8 6 22 22 C 1.54386 * 107.58949 * 358.28930 * 6 5 4 23 23 H 1.09010 * 109.47151 * 182.74306 * 1 2 3 24 24 H 1.09001 * 109.47512 * 302.74165 * 1 2 3 25 25 H 1.09005 * 109.47143 * 62.74123 * 1 2 3 26 26 H 1.08992 * 110.31012 * 86.72111 * 4 2 1 27 27 H 1.09000 * 110.39363 * 324.59003 * 4 2 1 28 28 H 1.08999 * 113.46537 * 267.69909 * 11 10 8 29 29 H 1.09000 * 113.46795 * 38.13564 * 11 10 8 30 30 H 1.08999 * 114.56946 * 272.66494 * 12 11 10 31 31 H 0.97001 * 120.00653 * 180.02562 * 16 15 13 32 32 H 1.09001 * 113.46648 * 321.85883 * 21 10 8 33 33 H 1.09003 * 113.46678 * 92.24128 * 21 10 8 34 34 H 1.09000 * 110.84933 * 96.83529 * 22 6 5 35 35 H 1.09001 * 110.84623 * 220.45575 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9204 1.0177 0.0000 4 6 2.0884 -0.8123 -1.1955 5 8 3.3897 -1.2520 -0.7751 6 6 3.4509 -1.3015 0.6552 7 1 4.2465 -0.6484 1.0140 8 6 3.7079 -2.7159 1.1073 9 8 3.7663 -3.6120 0.2920 10 7 3.8724 -2.9852 2.4176 11 6 3.8794 -2.2074 3.6657 12 6 3.4253 -3.4821 4.3958 13 6 4.0858 -3.6931 5.7338 14 1 4.9781 -4.2972 5.8062 15 6 3.5510 -3.1150 6.8654 16 7 4.1277 -3.2987 8.0330 17 14 2.0080 -2.0695 6.7400 18 1 0.8110 -2.9306 6.9159 19 1 2.0284 -1.0280 7.7985 20 1 1.9581 -1.4187 5.4062 21 6 4.1302 -4.1852 3.2278 22 6 2.0897 -0.8153 1.1975 23 1 -0.3634 -1.0266 0.0492 24 1 -0.3634 0.5558 0.8644 25 1 -0.3634 0.4707 -0.9136 26 1 2.1702 -0.1784 -2.0783 27 1 1.4485 -1.6697 -1.4041 28 1 4.8727 -1.8689 3.9606 29 1 3.1387 -1.4080 3.6832 30 1 2.3457 -3.6302 4.4201 31 1 3.7513 -2.8922 8.8292 32 1 3.6030 -5.0705 2.8722 33 1 5.1897 -4.3690 3.4063 34 1 1.4405 -1.6596 1.4292 35 1 2.2255 -0.1777 2.0711 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898674368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = -69.501775 kcal Electronic energy + Delta-G solvation = -17488.023425 eV Core-core repulsion = 14679.381161 eV Total energy + Delta-G solvation = -2808.642265 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65277 -40.24838 -38.51088 -34.71760 -34.55682 -32.35354 -30.50947 -27.43470 -27.10676 -26.76468 -24.28631 -21.98610 -21.50136 -19.82962 -19.17386 -18.47083 -17.60263 -16.92786 -16.79803 -16.50586 -15.88924 -15.17720 -14.90490 -14.74224 -14.50281 -14.18711 -13.87679 -13.47870 -13.39854 -13.26974 -12.79936 -12.61333 -12.47341 -12.25131 -12.01228 -11.80032 -11.68317 -11.56674 -11.23012 -11.16697 -10.67703 -10.33988 -9.67604 -8.25627 -6.34244 1.43972 1.46094 1.47227 1.56973 1.79325 2.41225 2.82345 3.05657 3.25910 3.47749 3.72121 3.90448 3.99929 4.08143 4.26906 4.29676 4.44340 4.49962 4.59197 4.63197 4.67732 4.72807 4.76718 4.83134 4.84762 4.92458 5.02219 5.19137 5.36008 5.37161 5.60756 5.83068 6.29540 6.71715 6.80245 7.07544 7.33476 8.89865 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.007039 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.793792 B = 3976.868143 C = 4696.133054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 H 0.111 0.889 4 C 0.042 3.958 5 O -0.382 6.382 6 C 0.074 3.926 7 H 0.124 0.876 8 C 0.515 3.485 9 O -0.590 6.590 10 N -0.641 5.641 11 C 0.097 3.903 12 C -0.011 4.011 13 C -0.515 4.515 14 H 0.038 0.962 15 C 0.019 3.981 16 N -0.945 5.945 17 Si 0.941 3.059 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.222 1.222 21 C 0.111 3.889 22 C -0.140 4.140 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.268 0.732 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 11.568 -13.272 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 H 0.129 0.871 4 C -0.033 4.033 5 O -0.300 6.300 6 C 0.014 3.986 7 H 0.141 0.859 8 C 0.306 3.694 9 O -0.471 6.471 10 N -0.376 5.376 11 C -0.025 4.025 12 C -0.030 4.030 13 C -0.553 4.553 14 H 0.057 0.943 15 C -0.179 4.179 16 N -0.584 5.584 17 Si 0.764 3.236 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.144 1.144 21 C -0.012 4.012 22 C -0.178 4.178 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.130 0.870 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.087 11.144 -13.911 19.573 hybrid contribution -0.180 -0.281 0.642 0.724 sum -8.267 10.863 -13.269 19.037 Atomic orbital electron populations 1.21680 0.92154 1.02247 1.03588 1.22886 0.98032 1.00192 0.92127 0.87054 1.23793 0.82993 0.97725 0.98827 1.88473 1.34016 1.88612 1.18945 1.22637 1.01911 0.91186 0.82905 0.85888 1.21335 0.76053 0.92256 0.79800 1.90629 1.54124 1.49529 1.52850 1.49941 1.69007 1.14185 1.04449 1.23831 1.02290 0.97559 0.78820 1.20701 0.96809 0.93559 0.91962 1.20911 1.11648 1.31829 0.90898 0.94338 1.25911 1.00476 0.97201 0.94360 1.70048 1.42526 1.45938 0.99853 0.85853 0.78838 0.78773 0.80185 1.20203 1.21485 1.14387 1.23035 1.00597 0.89395 0.88156 1.23245 0.92950 1.00881 1.00698 0.93254 0.90928 0.90444 0.86995 0.93045 0.89401 0.89357 0.91321 0.92339 0.92050 0.90525 0.91249 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.31 71.98 0.67 -1.18 16 2 C -0.11 -1.88 3.69 -9.34 -0.03 -1.91 16 3 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.04 0.91 7.26 72.65 0.53 1.43 16 5 O -0.38 -11.68 10.56 -130.19 -1.38 -13.06 16 6 C 0.07 2.12 3.78 30.32 0.11 2.24 16 7 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 8 C 0.51 19.49 7.28 87.66 0.64 20.13 16 9 O -0.59 -27.48 17.30 15.75 0.27 -27.21 16 10 N -0.64 -23.71 3.67 -857.80 -3.15 -26.86 16 11 C 0.10 3.38 7.26 83.27 0.60 3.98 16 12 C -0.01 -0.45 2.97 -11.12 -0.03 -0.48 16 13 C -0.51 -26.48 9.37 25.60 0.24 -26.24 16 14 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 15 C 0.02 1.00 5.47 84.65 0.46 1.46 16 16 N -0.94 -54.90 13.96 21.44 0.30 -54.60 16 17 Si 0.94 38.43 27.15 68.60 1.86 40.29 16 18 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.22 -7.55 5.72 99.48 0.57 -6.98 16 21 C 0.11 4.41 8.17 83.17 0.68 5.09 16 22 C -0.14 -3.04 5.40 31.86 0.17 -2.87 16 23 H 0.05 0.77 8.10 -2.38 -0.02 0.75 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.19 8.03 -2.39 -0.02 1.17 16 28 H 0.09 3.06 8.10 -2.39 -0.02 3.05 16 29 H 0.09 2.59 6.14 -2.39 -0.01 2.57 16 30 H 0.07 2.76 7.03 -2.39 -0.02 2.74 16 31 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 34 H 0.07 1.72 7.71 -2.39 -0.02 1.70 16 35 H 0.11 1.99 7.59 -2.39 -0.02 1.97 16 Total: -1.00 -68.25 288.56 2.88 -65.37 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.93 Total: 14.43 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.04 Total: 1.64 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.85 Total: -81.47 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.10 Total: -40.26 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.86 Total: 40.29 kcal Total: -68.25 2.88 -65.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898674368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.131 kcal (2) G-P(sol) polarization free energy of solvation -68.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds