Wall clock time and date at job start Sun Mar 29 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29954 * 125.30267 * 2 1 4 4 O 1.41868 * 107.41688 * 180.02562 * 3 2 1 5 5 N 1.41880 * 106.38641 * 359.97438 * 4 3 2 6 6 C 1.29944 * 107.41372 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.30643 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47656 * 164.97668 * 7 6 5 9 9 C 1.52996 * 109.47470 * 284.98229 * 7 6 5 10 10 N 1.46906 * 109.46947 * 44.97863 * 7 6 5 11 11 C 1.46897 * 111.00173 * 154.99615 * 10 7 6 12 12 C 1.52998 * 109.47353 * 180.02562 * 11 10 7 13 13 C 1.52999 * 109.47418 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47151 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00114 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99838 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00447 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47307 * 59.99660 * 18 16 14 20 20 H 1.48496 * 109.47467 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46629 * 299.99643 * 18 16 14 22 22 H 1.08994 * 109.47144 * 89.97914 * 1 2 3 23 23 H 1.09004 * 109.47099 * 209.97802 * 1 2 3 24 24 H 1.09000 * 109.47342 * 329.97783 * 1 2 3 25 25 H 1.09004 * 109.47174 * 59.99474 * 9 7 6 26 26 H 1.08997 * 109.47574 * 179.97438 * 9 7 6 27 27 H 1.08995 * 109.47238 * 300.00105 * 9 7 6 28 28 H 1.00899 * 110.99880 * 278.96008 * 10 7 6 29 29 H 1.08994 * 109.47660 * 300.00638 * 11 10 7 30 30 H 1.09004 * 109.46985 * 60.00747 * 11 10 7 31 31 H 1.09003 * 109.47500 * 300.00810 * 12 11 10 32 32 H 1.09002 * 109.46925 * 60.00137 * 12 11 10 33 33 H 1.09003 * 109.47306 * 300.00757 * 13 12 11 34 34 H 1.08996 * 109.46684 * 60.00119 * 13 12 11 35 35 H 0.97002 * 119.99954 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6249 -0.0006 5 7 3.5710 -0.7935 -0.0003 6 6 2.3213 -1.1498 0.0009 7 6 1.8210 -2.5713 0.0021 8 1 0.7643 -2.5844 0.2694 9 6 2.0022 -3.1770 -1.3911 10 7 2.5834 -3.3579 0.9810 11 6 1.8047 -4.5117 1.4504 12 6 2.6295 -5.3043 2.4664 13 6 1.8188 -6.5064 2.9548 14 6 2.6310 -7.2867 3.9560 15 1 3.6257 -6.9579 4.2181 16 6 2.1041 -8.4204 4.5375 17 7 0.8925 -8.8206 4.2187 18 14 3.1105 -9.3873 5.7791 19 1 3.4444 -8.5144 6.9331 20 1 2.3242 -10.5548 6.2521 21 1 4.3635 -9.8619 5.1385 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 3.0589 -3.1640 -1.6583 26 1 1.6407 -4.2053 -1.3901 27 1 1.4366 -2.5935 -2.1174 28 1 3.4694 -3.6512 0.5978 29 1 0.8861 -4.1626 1.9218 30 1 1.5579 -5.1521 0.6036 31 1 3.5484 -5.6534 1.9954 32 1 2.8761 -4.6637 3.3131 33 1 0.8997 -6.1577 3.4258 34 1 1.5727 -7.1468 2.1079 35 1 0.5220 -9.6184 4.6275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924942037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:41 Heat of formation + Delta-G solvation = 69.055128 kcal Electronic energy + Delta-G solvation = -16444.608500 eV Core-core repulsion = 13674.267264 eV Total energy + Delta-G solvation = -2770.341236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.60622 -37.55059 -34.63506 -33.96716 -32.73315 -31.37980 -29.32595 -28.96889 -26.09717 -24.69874 -22.69859 -21.46640 -20.72117 -19.99920 -17.22074 -16.29493 -16.23429 -15.36553 -15.23063 -14.84076 -14.46953 -14.23676 -13.71528 -13.69181 -13.29553 -13.05801 -12.61495 -12.27039 -12.09367 -11.89328 -11.62069 -11.53229 -11.45782 -10.88221 -10.81617 -10.79361 -10.64769 -10.54037 -9.75893 -9.38588 -9.10940 -8.44339 -8.35723 -6.01578 -4.03645 0.44022 1.84243 2.55711 3.02861 3.33330 3.37400 3.40404 3.58184 4.22803 4.44867 4.48291 4.63917 4.79287 4.91431 5.02221 5.03082 5.31803 5.34461 5.42428 5.47924 5.56199 5.66896 5.72494 5.86921 6.20572 6.59877 6.64253 6.84258 7.05855 7.12250 7.38890 7.64943 7.78840 7.98248 8.41535 9.03157 9.60609 11.09787 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043865 B = 0.003822 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.175339 B = 7324.586048 C = 7493.315048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.081 3.919 3 N -0.285 5.285 4 O 0.017 5.983 5 N -0.256 5.256 6 C 0.091 3.909 7 C 0.146 3.854 8 H 0.110 0.890 9 C -0.180 4.180 10 N -0.683 5.683 11 C 0.060 3.940 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.348 0.652 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 14.305 -11.614 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 N -0.030 5.030 4 O -0.123 6.123 5 N 0.000 5.000 6 C -0.093 4.093 7 C 0.034 3.966 8 H 0.128 0.872 9 C -0.240 4.240 10 N -0.314 5.314 11 C -0.068 4.068 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.029 15.410 -11.027 19.058 hybrid contribution 0.015 -1.559 -0.024 1.560 sum -2.014 13.851 -11.052 17.834 Atomic orbital electron populations 1.20598 0.84342 1.05507 1.04718 1.24569 1.00276 0.88958 0.96361 1.79874 0.89418 1.19799 1.13945 1.93383 1.19939 1.14309 1.84682 1.79941 1.17640 0.90382 1.12063 1.24608 0.89760 0.98759 0.96199 1.20211 0.98937 0.84798 0.92656 0.87205 1.22512 1.03212 1.02235 0.96036 1.60531 1.06934 1.25517 1.38466 1.22222 0.97303 0.89372 0.97909 1.21642 0.98401 0.97708 0.96883 1.19054 0.95184 0.91247 0.95955 1.21213 1.01353 1.09425 1.23891 0.92710 1.25017 0.95007 0.97479 0.96920 1.69952 1.15326 1.24662 1.43693 0.86654 0.80144 0.79456 0.81737 1.20204 1.21296 1.20250 0.88605 0.88542 0.89160 0.91627 0.90426 0.91613 0.83237 0.91084 0.95015 0.93459 0.92451 0.96537 0.96730 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.18 36.00 0.37 -0.18 16 2 C 0.08 0.85 7.19 -82.38 -0.59 0.26 16 3 N -0.28 -3.72 12.98 33.74 0.44 -3.29 16 4 O 0.02 0.25 13.71 12.03 0.16 0.42 16 5 N -0.26 -3.68 12.96 33.74 0.44 -3.24 16 6 C 0.09 1.07 6.04 -82.39 -0.50 0.58 16 7 C 0.15 1.52 2.98 -68.86 -0.21 1.32 16 8 H 0.11 0.93 6.46 -51.93 -0.34 0.60 16 9 C -0.18 -1.59 9.14 37.16 0.34 -1.25 16 10 N -0.68 -9.19 6.21 -107.95 -0.67 -9.87 16 11 C 0.06 0.92 5.48 -3.83 -0.02 0.90 16 12 C -0.11 -2.15 5.41 -26.73 -0.14 -2.29 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.10 0.44 6.99 -51.93 -0.36 0.08 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 26 H 0.08 0.68 7.45 -51.93 -0.39 0.29 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.35 4.68 8.47 -39.29 -0.33 4.34 16 29 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 30 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -31.84 302.01 -5.81 -37.66 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.15 Total: -3.23 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.30 Total: -13.67 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.94 Total: -42.30 kcal Atomic # 8 Polarization: 0.25 SS G_CDS: 0.16 Total: 0.42 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.84 -5.81 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924942037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.712 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds