Wall clock time and date at job start Sun Mar 29 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29954 * 125.30267 * 2 1 4 4 O 1.41868 * 107.41688 * 180.02562 * 3 2 1 5 5 N 1.41880 * 106.38641 * 359.97438 * 4 3 2 6 6 C 1.29944 * 107.41372 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.30643 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47656 * 164.97668 * 7 6 5 9 9 C 1.52996 * 109.47470 * 284.98229 * 7 6 5 10 10 N 1.46906 * 109.46947 * 44.97863 * 7 6 5 11 11 C 1.46897 * 111.00173 * 154.99615 * 10 7 6 12 12 C 1.52998 * 109.47353 * 180.02562 * 11 10 7 13 13 C 1.52999 * 109.47418 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47151 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00273 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00114 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99838 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00447 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47307 * 59.99660 * 18 16 14 20 20 H 1.48496 * 109.47467 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46629 * 299.99643 * 18 16 14 22 22 H 1.08994 * 109.47144 * 89.97914 * 1 2 3 23 23 H 1.09004 * 109.47099 * 209.97802 * 1 2 3 24 24 H 1.09000 * 109.47342 * 329.97783 * 1 2 3 25 25 H 1.09004 * 109.47174 * 59.99474 * 9 7 6 26 26 H 1.08997 * 109.47574 * 179.97438 * 9 7 6 27 27 H 1.08995 * 109.47238 * 300.00105 * 9 7 6 28 28 H 1.00899 * 110.99880 * 278.96008 * 10 7 6 29 29 H 1.08994 * 109.47660 * 300.00638 * 11 10 7 30 30 H 1.09004 * 109.46985 * 60.00747 * 11 10 7 31 31 H 1.09003 * 109.47500 * 300.00810 * 12 11 10 32 32 H 1.09002 * 109.46925 * 60.00137 * 12 11 10 33 33 H 1.09003 * 109.47306 * 300.00757 * 13 12 11 34 34 H 1.08996 * 109.46684 * 60.00119 * 13 12 11 35 35 H 0.97002 * 119.99954 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6249 -0.0006 5 7 3.5710 -0.7935 -0.0003 6 6 2.3213 -1.1498 0.0009 7 6 1.8210 -2.5713 0.0021 8 1 0.7643 -2.5844 0.2694 9 6 2.0022 -3.1770 -1.3911 10 7 2.5834 -3.3579 0.9810 11 6 1.8047 -4.5117 1.4504 12 6 2.6295 -5.3043 2.4664 13 6 1.8188 -6.5064 2.9548 14 6 2.6310 -7.2867 3.9560 15 1 3.6257 -6.9579 4.2181 16 6 2.1041 -8.4204 4.5375 17 7 0.8925 -8.8206 4.2187 18 14 3.1105 -9.3873 5.7791 19 1 3.4444 -8.5144 6.9331 20 1 2.3242 -10.5548 6.2521 21 1 4.3635 -9.8619 5.1385 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5142 25 1 3.0589 -3.1640 -1.6583 26 1 1.6407 -4.2053 -1.3901 27 1 1.4366 -2.5935 -2.1174 28 1 3.4694 -3.6512 0.5978 29 1 0.8861 -4.1626 1.9218 30 1 1.5579 -5.1521 0.6036 31 1 3.5484 -5.6534 1.9954 32 1 2.8761 -4.6637 3.3131 33 1 0.8997 -6.1577 3.4258 34 1 1.5727 -7.1468 2.1079 35 1 0.5220 -9.6184 4.6275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924942037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:41 Heat of formation + Delta-G solvation = 46.583268 kcal Electronic energy + Delta-G solvation = -16445.582953 eV Core-core repulsion = 13674.267264 eV Total energy + Delta-G solvation = -2771.315688 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.51866 -38.59898 -36.06553 -35.11917 -34.21648 -32.79125 -30.55736 -29.63077 -27.71723 -25.72312 -24.27921 -22.37959 -22.07742 -21.19062 -18.53027 -18.01116 -17.15208 -16.60338 -16.52470 -16.11422 -15.82760 -15.14189 -14.88299 -14.42786 -14.23063 -14.09264 -13.74517 -13.66959 -13.36804 -13.05477 -12.84135 -12.66638 -12.63525 -12.46955 -12.30165 -12.24017 -11.83141 -11.62735 -11.51403 -11.34693 -11.09003 -10.52329 -9.49631 -8.18725 -6.28633 -0.48285 0.99358 1.41245 1.43332 1.51328 1.58436 2.14095 2.42039 2.69361 3.14705 3.28096 3.66652 3.90077 4.02409 4.25038 4.27530 4.34011 4.40945 4.63490 4.69774 4.73765 4.77268 4.80849 5.03052 5.12207 5.13491 5.18748 5.26533 5.54184 5.79069 5.86455 5.89590 5.99369 6.28193 6.30868 6.88038 7.40296 8.92570 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043865 B = 0.003822 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.175339 B = 7324.586048 C = 7493.315048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.097 3.903 3 N -0.308 5.308 4 O -0.024 6.024 5 N -0.286 5.286 6 C 0.098 3.902 7 C 0.147 3.853 8 H 0.138 0.862 9 C -0.175 4.175 10 N -0.694 5.694 11 C 0.076 3.924 12 C -0.097 4.097 13 C 0.027 3.973 14 C -0.546 4.546 15 H 0.054 0.946 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.124 0.876 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.347 0.653 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.046 0.954 33 H -0.004 1.004 34 H -0.003 1.003 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 14.269 -11.987 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 N -0.058 5.058 4 O -0.157 6.157 5 N -0.032 5.032 6 C -0.086 4.086 7 C 0.035 3.965 8 H 0.156 0.844 9 C -0.235 4.235 10 N -0.325 5.325 11 C -0.053 4.053 12 C -0.135 4.135 13 C -0.011 4.011 14 C -0.584 4.584 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.194 1.194 22 H 0.142 0.858 23 H 0.134 0.866 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.922 15.409 -11.410 19.395 hybrid contribution 0.225 -1.564 0.072 1.582 sum -2.698 13.844 -11.338 18.096 Atomic orbital electron populations 1.20927 0.80671 1.06845 1.06859 1.25287 1.02156 0.87618 0.93551 1.79864 0.88800 1.20892 1.16217 1.93356 1.21621 1.14690 1.86004 1.79902 1.19318 0.90350 1.13668 1.25002 0.89374 0.99734 0.94538 1.20435 0.99744 0.83330 0.92943 0.84406 1.22469 1.02970 1.02702 0.95345 1.60391 1.07129 1.24790 1.40208 1.21909 0.96569 0.89724 0.97059 1.21397 0.98235 0.96069 0.97768 1.18950 0.94767 0.92709 0.94652 1.21686 1.01771 1.10189 1.24760 0.92739 1.25898 0.96125 0.98586 0.98889 1.70066 1.16868 1.25239 1.44884 0.85584 0.78723 0.78011 0.79240 1.19470 1.20664 1.19365 0.85787 0.86617 0.88357 0.92754 0.89978 0.89331 0.83366 0.90424 0.93952 0.93512 0.93514 0.98511 0.98478 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.18 71.24 0.73 -0.03 16 2 C 0.10 1.84 7.19 43.49 0.31 2.15 16 3 N -0.31 -7.92 12.98 -47.16 -0.61 -8.53 16 4 O -0.02 -0.75 13.71 70.18 0.96 0.22 16 5 N -0.29 -8.20 12.96 -47.16 -0.61 -8.81 16 6 C 0.10 2.16 6.04 43.49 0.26 2.42 16 7 C 0.15 2.66 2.98 44.17 0.13 2.79 16 8 H 0.14 1.75 6.46 -2.39 -0.02 1.74 16 9 C -0.18 -2.60 9.14 71.98 0.66 -1.94 16 10 N -0.69 -17.48 6.21 -495.46 -3.08 -20.56 16 11 C 0.08 2.19 5.48 86.30 0.47 2.66 16 12 C -0.10 -3.79 5.41 30.59 0.17 -3.63 16 13 C 0.03 1.36 4.97 29.85 0.15 1.51 16 14 C -0.55 -30.89 9.11 25.60 0.23 -30.66 16 15 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 18 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.12 0.53 6.99 -2.39 -0.02 0.51 16 24 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 0.94 8.13 -2.38 -0.02 0.93 16 26 H 0.08 1.19 7.45 -2.39 -0.02 1.17 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.35 8.94 8.47 -89.69 -0.76 8.18 16 29 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 30 H 0.04 1.15 7.44 -2.38 -0.02 1.13 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -70.06 302.01 2.87 -67.19 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 0.33 Total: 3.76 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 3.57 Total: -24.09 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -4.02 Total: -93.14 kcal Atomic # 8 Polarization: -0.75 SS G_CDS: 0.96 Total: 0.22 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.06 2.87 -67.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924942037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.773 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds