Wall clock time and date at job start Sun Mar 29 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46647 * 2 1 4 4 C 1.34805 * 116.99509 * 180.02562 * 3 2 1 5 5 O 1.21536 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.46953 * 119.99582 * 180.02562 * 4 3 2 7 7 C 1.33081 * 119.99429 * 185.32049 * 6 4 3 8 8 C 1.50703 * 120.00499 * 4.48816 * 7 6 4 9 9 N 1.46503 * 109.47001 * 138.47341 * 8 7 6 10 10 C 1.36937 * 119.99932 * 90.00578 * 9 8 7 11 11 H 1.08004 * 119.99346 * 215.45341 * 10 9 8 12 12 C 1.38807 * 120.00073 * 35.44991 * 10 9 8 13 13 N 1.31617 * 120.00237 * 21.17862 * 12 10 9 14 14 Si 1.86798 * 119.99996 * 201.18243 * 12 10 9 15 15 H 1.48504 * 109.47301 * 270.00137 * 14 12 10 16 16 H 1.48503 * 109.47145 * 29.99679 * 14 12 10 17 17 H 1.48501 * 109.47294 * 149.99850 * 14 12 10 18 18 C 1.46498 * 119.99806 * 270.00143 * 9 8 7 19 19 C 1.53001 * 117.49732 * 183.90934 * 18 9 8 20 20 C 1.53000 * 117.49963 * 115.28491 * 18 9 8 21 21 H 1.08998 * 109.47365 * 299.99596 * 1 2 3 22 22 H 1.08999 * 109.47740 * 60.00055 * 1 2 3 23 23 H 1.09004 * 109.47383 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46868 * 240.00223 * 2 1 3 25 25 H 1.08997 * 109.47268 * 120.00171 * 2 1 3 26 26 H 1.07994 * 120.00097 * 5.32510 * 6 4 3 27 27 H 1.08000 * 119.99897 * 184.48420 * 7 6 4 28 28 H 1.08999 * 109.47063 * 18.47661 * 8 7 6 29 29 H 1.08992 * 109.47049 * 258.47638 * 8 7 6 30 30 H 0.96994 * 119.99841 * 174.96558 * 13 12 10 31 31 H 1.08999 * 115.55160 * 329.61360 * 18 9 8 32 32 H 1.08997 * 117.49808 * 359.97438 * 19 18 9 33 33 H 1.08998 * 117.50219 * 145.02237 * 19 18 9 34 34 H 1.08999 * 117.49806 * 214.97515 * 20 18 9 35 35 H 1.09000 * 117.50027 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3503 1.5457 -0.0005 5 8 4.0907 0.5818 -0.0015 6 6 3.9119 2.9037 0.0000 7 6 5.2266 3.0799 -0.1074 8 6 6.1301 1.8947 -0.3311 9 7 7.1566 2.2424 -1.3168 10 6 8.3463 2.7814 -0.9054 11 1 8.8391 3.5276 -1.5110 12 6 8.9188 2.3687 0.2898 13 7 8.5808 1.2107 0.8162 14 14 10.1690 3.4568 1.1513 15 1 11.5330 3.1210 0.6695 16 1 9.8751 4.8813 0.8519 17 1 10.0930 3.2332 2.6175 18 6 6.9103 2.0133 -2.7427 19 6 8.0543 2.3111 -3.7140 20 6 6.8404 3.2405 -3.6537 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.2578 3.7585 0.0876 27 1 5.6461 4.0725 -0.0343 28 1 5.5422 1.0542 -0.6997 29 1 6.6077 1.6194 0.6092 30 1 9.0332 0.8889 1.6116 31 1 6.2557 1.1741 -2.9778 32 1 8.9900 2.6779 -3.2921 33 1 8.1526 1.6677 -4.5883 34 1 6.1401 3.2085 -4.4883 35 1 6.9773 4.2184 -3.1921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929465548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:07 Heat of formation + Delta-G solvation = -10.832381 kcal Electronic energy + Delta-G solvation = -17170.072427 eV Core-core repulsion = 14363.974258 eV Total energy + Delta-G solvation = -2806.098169 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.92721 -37.23776 -36.32381 -33.97326 -32.52835 -31.57047 -30.09034 -26.11644 -24.27623 -23.06370 -21.62714 -21.38757 -19.86797 -19.14797 -17.33912 -16.49732 -16.18858 -15.65359 -14.82544 -14.38563 -14.12924 -13.78613 -13.59396 -13.08658 -12.79654 -12.48408 -12.00411 -11.80045 -11.70427 -11.42787 -11.21847 -10.93245 -10.83015 -10.67237 -10.30079 -10.22948 -10.14074 -9.80745 -9.40696 -8.87728 -8.80778 -8.32563 -6.55527 -5.86664 -3.42111 1.87914 3.14496 3.30690 3.38846 3.40948 3.57531 4.38525 4.91475 4.98916 5.03111 5.19898 5.26374 5.30632 5.36481 5.76454 5.79128 5.79492 5.89918 5.95234 6.07377 6.22243 6.28584 6.44965 6.60266 6.65750 6.78557 6.94037 7.04478 7.11473 7.41479 7.68182 7.84025 8.38244 8.44980 9.10253 9.73542 10.29556 11.13373 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025296 B = 0.006645 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.621520 B = 4212.676492 C = 4853.402281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.366 6.366 4 C 0.490 3.510 5 O -0.500 6.500 6 C -0.263 4.263 7 C -0.014 4.014 8 C 0.118 3.882 9 N -0.549 5.549 10 C -0.264 4.264 11 H 0.065 0.935 12 C 0.011 3.989 13 N -0.881 5.881 14 Si 0.901 3.099 15 H -0.284 1.284 16 H -0.277 1.277 17 H -0.287 1.287 18 C 0.126 3.874 19 C -0.190 4.190 20 C -0.229 4.229 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.259 0.741 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 0.642 -2.119 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.284 6.284 4 C 0.339 3.661 5 O -0.390 6.390 6 C -0.284 4.284 7 C -0.036 4.036 8 C -0.006 4.006 9 N -0.265 5.265 10 C -0.393 4.393 11 H 0.082 0.918 12 C -0.189 4.189 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.211 1.211 16 H -0.202 1.202 17 H -0.213 1.213 18 C 0.017 3.983 19 C -0.228 4.228 20 C -0.270 4.270 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.304 0.230 -1.885 11.462 hybrid contribution 0.717 0.605 0.396 1.019 sum -10.586 0.835 -1.489 10.723 Atomic orbital electron populations 1.21783 0.93222 1.02527 1.03220 1.22883 0.94794 0.81184 1.02436 1.86589 1.25281 1.31319 1.85204 1.21851 0.79693 0.91294 0.73229 1.90725 1.58379 1.43536 1.46394 1.21511 0.95951 0.92404 1.18486 1.25323 0.94049 1.03592 0.80618 1.21478 0.88633 0.92327 0.98115 1.43482 1.13068 1.71361 0.98558 1.19051 0.98935 1.16601 1.04723 0.91752 1.25224 0.98026 0.95593 1.00088 1.69857 1.41942 1.17210 1.23273 0.86327 0.81171 0.80622 0.78928 1.21074 1.20206 1.21324 1.21112 0.98910 0.94621 0.83699 1.23028 0.94845 1.03668 1.01236 1.23425 1.01616 0.97724 1.04243 0.91713 0.91702 0.90627 0.91533 0.91493 0.85932 0.85924 0.88170 0.86047 0.93055 0.89747 0.88251 0.90606 0.90874 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.80 6.20 37.16 0.23 1.03 16 3 O -0.37 -5.92 10.23 -40.78 -0.42 -6.33 16 4 C 0.49 9.21 7.82 34.26 0.27 9.48 16 5 O -0.50 -10.81 12.72 -19.29 -0.25 -11.05 16 6 C -0.26 -4.70 10.15 -37.85 -0.38 -5.08 16 7 C -0.01 -0.28 9.93 -36.10 -0.36 -0.64 16 8 C 0.12 2.85 4.91 -5.19 -0.03 2.83 16 9 N -0.55 -13.71 2.76 -167.02 -0.46 -14.17 16 10 C -0.26 -7.02 8.45 -15.06 -0.13 -7.15 16 11 H 0.06 1.70 6.85 -52.48 -0.36 1.34 16 12 C 0.01 0.31 4.98 -17.43 -0.09 0.22 16 13 N -0.88 -25.21 11.30 55.49 0.63 -24.59 16 14 Si 0.90 21.08 29.61 -169.99 -5.03 16.04 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.13 2.78 6.57 -67.93 -0.45 2.34 16 19 C -0.19 -3.82 9.77 -26.73 -0.26 -4.08 16 20 C -0.23 -4.41 10.35 -26.73 -0.28 -4.69 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.10 2.51 4.57 -54.60 -0.25 2.26 16 29 H 0.12 3.36 5.35 -51.93 -0.28 3.08 16 30 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 31 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.10 2.16 6.54 -51.93 -0.34 1.82 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -29.40 298.37 -7.13 -36.53 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.01 Total: 5.85 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.09 Total: -6.77 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.17 Total: -38.76 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.66 Total: -17.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.40 -7.13 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.696 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds