Wall clock time and date at job start Sun Mar 29 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00047 * 2 1 4 4 C 1.53004 * 109.47135 * 66.05203 * 3 2 1 5 5 N 1.46494 * 109.47106 * 179.97438 * 4 3 2 6 6 C 1.34954 * 126.03475 * 124.99860 * 5 4 3 7 7 C 1.35316 * 107.74368 * 179.73518 * 6 5 4 8 8 C 1.39868 * 107.92272 * 0.02562 * 7 6 5 9 9 N 1.30837 * 108.20148 * 359.97438 * 8 7 6 10 10 C 1.46907 * 110.99722 * 236.05156 * 2 1 3 11 11 C 1.53001 * 109.46608 * 293.95304 * 10 2 1 12 12 H 1.08995 * 109.47531 * 60.00226 * 11 10 2 13 13 O 1.42901 * 109.47292 * 299.99803 * 11 10 2 14 14 C 1.50706 * 109.46586 * 180.02562 * 11 10 2 15 15 H 1.07997 * 120.00432 * 359.97438 * 14 11 10 16 16 C 1.37883 * 119.99618 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99529 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00269 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.47022 * 89.99946 * 18 16 14 20 20 H 1.48493 * 109.47134 * 210.00247 * 18 16 14 21 21 H 1.48501 * 109.46974 * 330.00291 * 18 16 14 22 22 H 1.08991 * 109.47472 * 59.99491 * 1 2 3 23 23 H 1.08994 * 109.47027 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46723 * 299.99639 * 1 2 3 25 25 H 1.09002 * 109.47301 * 306.04759 * 3 2 1 26 26 H 1.08998 * 109.47005 * 186.05296 * 3 2 1 27 27 H 1.08999 * 109.46666 * 59.99578 * 4 3 2 28 28 H 1.09007 * 109.46675 * 299.99950 * 4 3 2 29 29 H 1.07999 * 126.12426 * 359.75442 * 6 5 4 30 30 H 1.07999 * 126.03437 * 179.97438 * 7 6 5 31 31 H 1.08001 * 125.89990 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.46861 * 53.95121 * 10 2 1 33 33 H 1.08995 * 109.46990 * 173.95199 * 10 2 1 34 34 H 0.96700 * 113.99559 * 300.00658 * 13 11 10 35 35 H 0.97002 * 119.99547 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3184 5 7 2.1571 3.4249 1.3186 6 6 1.4421 4.5501 1.5278 7 6 2.2931 5.5995 1.4525 8 6 3.5719 5.0984 1.1877 9 7 3.4916 3.7950 1.1075 10 6 1.9954 -0.7659 -1.1377 11 6 1.6313 -2.2425 -0.9705 12 1 0.5471 -2.3474 -0.9324 13 8 2.2008 -2.7392 0.2424 14 6 2.1719 -3.0284 -2.1373 15 1 2.7199 -2.5249 -2.9200 16 6 1.9668 -4.3902 -2.2055 17 7 2.4381 -5.0758 -3.2240 18 14 1.0197 -5.2611 -0.8514 19 1 -0.4261 -5.2770 -1.1901 20 1 1.5129 -6.6556 -0.7206 21 1 1.2193 -4.5429 0.4330 22 1 -0.3634 0.5139 -0.8898 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5611 1.9274 -0.8309 26 1 3.0797 1.3444 -0.1084 27 1 2.0660 1.5014 2.1491 28 1 0.5473 2.0844 1.4266 29 1 0.3809 4.6035 1.7209 30 1 2.0310 6.6401 1.5744 31 1 4.4704 5.6860 1.0699 32 1 1.5610 -0.3871 -2.0628 33 1 3.0796 -0.6610 -1.1758 34 1 3.1652 -2.6771 0.2783 35 1 2.2935 -6.0338 -3.2722 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929621765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:37 Heat of formation + Delta-G solvation = 42.462301 kcal Electronic energy + Delta-G solvation = -16863.340408 eV Core-core repulsion = 14091.846021 eV Total energy + Delta-G solvation = -2771.494387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17969 -37.92170 -35.53342 -33.27224 -32.23136 -30.29673 -29.27780 -27.95519 -26.41857 -24.27761 -21.83800 -21.15724 -20.36655 -20.09329 -17.58045 -17.06621 -15.74282 -15.19725 -14.95559 -14.86047 -14.44393 -14.28744 -13.70404 -13.43556 -13.30470 -12.98772 -12.72817 -12.63249 -12.15669 -11.64272 -11.37586 -11.12383 -10.97105 -10.92108 -10.61971 -10.34997 -9.92182 -9.51194 -9.03291 -8.70343 -8.62154 -8.27452 -7.92933 -6.13539 -4.25085 1.83061 2.42382 2.76576 3.38392 3.48425 3.75939 4.16050 4.51402 4.53623 4.72686 4.95673 4.97855 5.21556 5.24417 5.39567 5.47004 5.58879 5.66807 5.78939 5.85343 5.89405 5.92716 6.00325 6.20094 6.26610 6.55593 6.57681 6.91653 7.19501 7.26740 7.46592 7.63962 7.64854 8.28895 8.83030 9.10589 9.51203 10.97156 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056376 B = 0.004508 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.549839 B = 6209.134410 C = 6398.520227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.046 3.954 4 C 0.135 3.865 5 N -0.366 5.366 6 C 0.052 3.948 7 C -0.281 4.281 8 C 0.038 3.962 9 N -0.291 5.291 10 C 0.042 3.958 11 C 0.202 3.798 12 H 0.053 0.947 13 O -0.571 6.571 14 C -0.567 4.567 15 H 0.071 0.929 16 C 0.084 3.916 17 N -0.893 5.893 18 Si 0.871 3.129 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.215 1.215 22 H 0.021 0.979 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.171 0.829 30 H 0.145 0.855 31 H 0.181 0.819 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.355 0.645 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 17.959 9.684 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.083 4.083 4 C 0.014 3.986 5 N -0.149 5.149 6 C -0.095 4.095 7 C -0.310 4.310 8 C -0.148 4.148 9 N -0.113 5.113 10 C -0.086 4.086 11 C 0.144 3.856 12 H 0.071 0.929 13 O -0.376 6.376 14 C -0.605 4.605 15 H 0.089 0.911 16 C -0.121 4.121 17 N -0.530 5.530 18 Si 0.697 3.303 19 H -0.215 1.215 20 H -0.222 1.222 21 H -0.137 1.137 22 H 0.040 0.960 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.188 0.812 30 H 0.162 0.838 31 H 0.198 0.802 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.288 16.210 9.984 19.320 hybrid contribution -0.707 0.800 -0.462 1.164 sum -3.996 17.010 9.522 19.899 Atomic orbital electron populations 1.22486 0.88141 1.02971 0.99327 1.61972 1.07435 1.10628 1.45491 1.22288 1.01867 0.89664 0.94474 1.21796 0.98854 0.77359 1.00595 1.48822 1.05694 1.06530 1.53823 1.22585 0.98805 0.86404 1.01730 1.21486 0.93070 0.99667 1.16802 1.23892 0.98766 0.91907 1.00218 1.77403 0.96149 1.14663 1.23067 1.22875 0.99775 0.96646 0.89275 1.19716 0.94496 0.87300 0.84059 0.92922 1.86651 1.23999 1.85414 1.41534 1.21516 1.38163 0.93424 1.07413 0.91106 1.24987 0.94206 0.97477 0.95398 1.69960 1.44805 1.07950 1.30325 0.87026 0.78959 0.78221 0.86062 1.21516 1.22233 1.13703 0.96027 0.90324 0.92261 0.95016 0.89546 0.88656 0.88751 0.81161 0.83759 0.80217 0.94825 0.91048 0.79904 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.13 60.07 0.55 0.82 16 2 N -0.53 -8.71 4.63 -242.91 -1.12 -9.84 16 3 C 0.05 0.66 5.15 -3.82 -0.02 0.64 16 4 C 0.14 1.60 6.43 -4.04 -0.03 1.57 16 5 N -0.37 -4.56 3.68 -61.36 -0.23 -4.79 16 6 C 0.05 0.52 11.45 -17.22 -0.20 0.32 16 7 C -0.28 -2.77 10.80 -40.01 -0.43 -3.20 16 8 C 0.04 0.43 12.03 -17.37 -0.21 0.22 16 9 N -0.29 -4.09 12.42 30.62 0.38 -3.71 16 10 C 0.04 0.81 4.56 -3.82 -0.02 0.79 16 11 C 0.20 4.66 2.19 -27.88 -0.06 4.60 16 12 H 0.05 1.24 5.90 -51.93 -0.31 0.94 16 13 O -0.57 -12.97 10.00 -35.23 -0.35 -13.32 16 14 C -0.57 -15.70 9.34 -34.44 -0.32 -16.02 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 17 N -0.89 -27.31 13.96 55.43 0.77 -26.53 16 18 Si 0.87 21.75 26.99 -169.99 -4.59 17.17 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.21 -5.25 5.30 56.52 0.30 -4.95 16 22 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 1.28 6.30 -51.93 -0.33 0.95 16 24 H 0.06 0.69 6.47 -51.93 -0.34 0.35 16 25 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 27 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.09 0.90 6.48 -51.92 -0.34 0.56 16 29 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 34 H 0.35 7.32 9.04 45.56 0.41 7.73 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -32.72 290.79 -5.92 -38.64 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.33 Total: 5.94 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -0.83 Total: -7.94 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.20 Total: -44.86 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.35 Total: -13.32 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.72 -5.92 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929621765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.102 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds