Wall clock time and date at job start Sun Mar 29 2020 22:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00047 * 2 1 4 4 C 1.53004 * 109.47135 * 66.05203 * 3 2 1 5 5 N 1.46494 * 109.47106 * 179.97438 * 4 3 2 6 6 C 1.34954 * 126.03475 * 124.99860 * 5 4 3 7 7 C 1.35316 * 107.74368 * 179.73518 * 6 5 4 8 8 C 1.39868 * 107.92272 * 0.02562 * 7 6 5 9 9 N 1.30837 * 108.20148 * 359.97438 * 8 7 6 10 10 C 1.46907 * 110.99722 * 236.05156 * 2 1 3 11 11 C 1.53001 * 109.46608 * 293.95304 * 10 2 1 12 12 H 1.08995 * 109.47531 * 60.00226 * 11 10 2 13 13 O 1.42901 * 109.47292 * 299.99803 * 11 10 2 14 14 C 1.50706 * 109.46586 * 180.02562 * 11 10 2 15 15 H 1.07997 * 120.00432 * 359.97438 * 14 11 10 16 16 C 1.37883 * 119.99618 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99529 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00269 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.47022 * 89.99946 * 18 16 14 20 20 H 1.48493 * 109.47134 * 210.00247 * 18 16 14 21 21 H 1.48501 * 109.46974 * 330.00291 * 18 16 14 22 22 H 1.08991 * 109.47472 * 59.99491 * 1 2 3 23 23 H 1.08994 * 109.47027 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46723 * 299.99639 * 1 2 3 25 25 H 1.09002 * 109.47301 * 306.04759 * 3 2 1 26 26 H 1.08998 * 109.47005 * 186.05296 * 3 2 1 27 27 H 1.08999 * 109.46666 * 59.99578 * 4 3 2 28 28 H 1.09007 * 109.46675 * 299.99950 * 4 3 2 29 29 H 1.07999 * 126.12426 * 359.75442 * 6 5 4 30 30 H 1.07999 * 126.03437 * 179.97438 * 7 6 5 31 31 H 1.08001 * 125.89990 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.46861 * 53.95121 * 10 2 1 33 33 H 1.08995 * 109.46990 * 173.95199 * 10 2 1 34 34 H 0.96700 * 113.99559 * 300.00658 * 13 11 10 35 35 H 0.97002 * 119.99547 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3184 5 7 2.1571 3.4249 1.3186 6 6 1.4421 4.5501 1.5278 7 6 2.2931 5.5995 1.4525 8 6 3.5719 5.0984 1.1877 9 7 3.4916 3.7950 1.1075 10 6 1.9954 -0.7659 -1.1377 11 6 1.6313 -2.2425 -0.9705 12 1 0.5471 -2.3474 -0.9324 13 8 2.2008 -2.7392 0.2424 14 6 2.1719 -3.0284 -2.1373 15 1 2.7199 -2.5249 -2.9200 16 6 1.9668 -4.3902 -2.2055 17 7 2.4381 -5.0758 -3.2240 18 14 1.0197 -5.2611 -0.8514 19 1 -0.4261 -5.2770 -1.1901 20 1 1.5129 -6.6556 -0.7206 21 1 1.2193 -4.5429 0.4330 22 1 -0.3634 0.5139 -0.8898 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5611 1.9274 -0.8309 26 1 3.0797 1.3444 -0.1084 27 1 2.0660 1.5014 2.1491 28 1 0.5473 2.0844 1.4266 29 1 0.3809 4.6035 1.7209 30 1 2.0310 6.6401 1.5744 31 1 4.4704 5.6860 1.0699 32 1 1.5610 -0.3871 -2.0628 33 1 3.0796 -0.6610 -1.1758 34 1 3.1652 -2.6771 0.2783 35 1 2.2935 -6.0338 -3.2722 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929621765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:36 Heat of formation + Delta-G solvation = 16.652879 kcal Electronic energy + Delta-G solvation = -16864.459589 eV Core-core repulsion = 14091.846021 eV Total energy + Delta-G solvation = -2772.613568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.98888 -39.35903 -37.16691 -34.43040 -34.29397 -31.23788 -30.71679 -29.16097 -27.92787 -25.75146 -23.16243 -21.95395 -21.73706 -21.28452 -19.40801 -18.15100 -16.93965 -16.80876 -16.56228 -16.28279 -15.85393 -15.45260 -15.02702 -14.88335 -14.50207 -14.35217 -13.92219 -13.57348 -13.50698 -13.17247 -12.92398 -12.71749 -12.55492 -12.48621 -12.04536 -11.73895 -11.46811 -11.05726 -10.81283 -10.40086 -10.13331 -9.48898 -9.29141 -8.36323 -6.51816 1.03474 1.40252 1.46293 1.60031 1.77003 2.00273 2.44309 2.94498 3.02629 3.58166 3.93923 4.04767 4.07783 4.14836 4.18032 4.26251 4.40247 4.50709 4.56597 4.69672 4.81132 4.88256 4.92939 4.94708 5.04741 5.19004 5.43484 5.45832 5.77841 5.98024 6.06033 6.10267 6.21739 6.60973 6.82570 7.20933 7.35920 8.78114 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.056376 B = 0.004508 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.549839 B = 6209.134410 C = 6398.520227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.056 3.944 4 C 0.144 3.856 5 N -0.381 5.381 6 C 0.053 3.947 7 C -0.287 4.287 8 C 0.033 3.967 9 N -0.345 5.345 10 C 0.054 3.946 11 C 0.212 3.788 12 H 0.055 0.945 13 O -0.571 6.571 14 C -0.571 4.571 15 H 0.033 0.967 16 C 0.028 3.972 17 N -0.941 5.941 18 Si 0.941 3.059 19 H -0.283 1.283 20 H -0.298 1.298 21 H -0.203 1.203 22 H 0.027 0.973 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.208 0.792 30 H 0.170 0.830 31 H 0.202 0.798 32 H 0.025 0.975 33 H 0.062 0.938 34 H 0.365 0.635 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 19.538 11.798 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.259 5.259 3 C -0.073 4.073 4 C 0.022 3.978 5 N -0.164 5.164 6 C -0.093 4.093 7 C -0.316 4.316 8 C -0.153 4.153 9 N -0.167 5.167 10 C -0.074 4.074 11 C 0.153 3.847 12 H 0.073 0.927 13 O -0.377 6.377 14 C -0.609 4.609 15 H 0.051 0.949 16 C -0.172 4.172 17 N -0.580 5.580 18 Si 0.765 3.235 19 H -0.209 1.209 20 H -0.225 1.225 21 H -0.124 1.124 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.143 0.857 29 H 0.225 0.775 30 H 0.188 0.812 31 H 0.219 0.781 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.212 0.788 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.031 17.823 12.109 22.127 hybrid contribution -0.111 0.431 -1.164 1.246 sum -5.142 18.254 10.944 21.896 Atomic orbital electron populations 1.22579 0.86567 1.02572 1.01438 1.61889 1.08861 1.11679 1.43434 1.22169 1.00410 0.88526 0.96224 1.21700 1.00461 0.77261 0.98338 1.48872 1.05575 1.07116 1.54814 1.23273 1.00413 0.85473 1.00159 1.21890 0.92402 1.01047 1.16252 1.24431 1.00418 0.91450 0.98972 1.77353 0.97689 1.16285 1.25407 1.22517 0.99377 0.95189 0.90344 1.19495 0.94199 0.88698 0.82287 0.92708 1.86580 1.24970 1.85543 1.40653 1.21869 1.37196 0.93826 1.08018 0.94915 1.25892 0.95240 0.98431 0.97625 1.70090 1.46918 1.08409 1.32607 0.85951 0.77529 0.76674 0.83361 1.20891 1.22491 1.12439 0.95400 0.91971 0.88642 0.95251 0.91738 0.89324 0.85697 0.77538 0.81212 0.78109 0.95682 0.91915 0.78793 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 127.69 1.17 1.59 16 2 N -0.53 -16.70 4.63 -922.44 -4.27 -20.97 16 3 C 0.06 1.52 5.15 86.30 0.44 1.97 16 4 C 0.14 3.05 6.43 86.38 0.56 3.60 16 5 N -0.38 -8.73 3.68 -348.06 -1.28 -10.01 16 6 C 0.05 0.89 11.45 83.54 0.96 1.85 16 7 C -0.29 -4.87 10.80 21.99 0.24 -4.63 16 8 C 0.03 0.68 12.03 85.24 1.02 1.71 16 9 N -0.35 -9.44 12.42 -57.02 -0.71 -10.15 16 10 C 0.05 2.10 4.56 86.30 0.39 2.49 16 11 C 0.21 9.62 2.19 29.85 0.07 9.69 16 12 H 0.06 2.51 5.90 -2.39 -0.01 2.50 16 13 O -0.57 -25.04 10.00 -148.98 -1.49 -26.53 16 14 C -0.57 -32.20 9.34 25.60 0.24 -31.96 16 15 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 16 C 0.03 1.61 5.47 84.66 0.46 2.07 16 17 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 18 Si 0.94 44.95 26.99 68.60 1.85 46.80 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 21 H -0.20 -9.21 5.30 99.48 0.53 -8.68 16 22 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.06 1.86 6.30 -2.39 -0.02 1.85 16 24 H 0.10 1.82 6.47 -2.39 -0.02 1.80 16 25 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 26 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.13 1.84 6.48 -2.38 -0.02 1.83 16 29 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.20 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.02 1.01 8.12 -2.39 -0.02 0.99 16 33 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 34 H 0.36 14.62 9.04 -74.06 -0.67 13.95 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -71.59 290.79 0.18 -71.41 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.23 Total: 19.58 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.55 Total: -11.62 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -5.96 Total: -99.65 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.49 Total: -26.53 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.85 Total: 46.80 kcal Total: -71.59 0.18 -71.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929621765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.061 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds