Wall clock time and date at job start Sun Mar 29 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47089 * 2 1 4 4 C 1.34230 * 117.00196 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00074 * 179.72661 * 4 3 2 7 7 H 1.08997 * 115.57620 * 271.97937 * 6 4 3 8 8 C 1.53819 * 117.54064 * 125.99416 * 6 4 3 9 9 H 1.09001 * 116.79264 * 145.58251 * 8 6 4 10 10 C 1.52098 * 115.98382 * 5.24262 * 8 6 4 11 11 C 1.51718 * 112.45934 * 270.68722 * 10 8 6 12 12 N 1.45314 * 111.99373 * 41.34220 * 11 10 8 13 13 C 1.36936 * 118.81627 * 124.07540 * 12 11 10 14 14 H 1.08003 * 120.00266 * 328.58274 * 13 12 11 15 15 C 1.38818 * 119.99899 * 148.57855 * 13 12 11 16 16 N 1.31618 * 119.99759 * 350.41006 * 15 13 12 17 17 Si 1.86801 * 119.99882 * 170.41237 * 15 13 12 18 18 H 1.48505 * 109.47092 * 85.58938 * 17 15 13 19 19 H 1.48502 * 109.46698 * 205.58238 * 17 15 13 20 20 H 1.48497 * 109.47223 * 325.58522 * 17 15 13 21 21 C 1.45519 * 122.36407 * 304.06953 * 12 11 10 22 22 C 1.51810 * 111.27533 * 39.91468 * 21 12 11 23 23 H 1.08999 * 114.17650 * 202.92042 * 22 21 12 24 24 H 1.08998 * 109.47411 * 300.00044 * 1 2 3 25 25 H 1.09001 * 109.47301 * 60.00214 * 1 2 3 26 26 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46948 * 239.99881 * 2 1 3 28 28 H 1.08996 * 109.47007 * 120.00171 * 2 1 3 29 29 H 1.09005 * 108.88347 * 31.45414 * 10 8 6 30 30 H 1.08991 * 108.88465 * 150.01669 * 10 8 6 31 31 H 1.09000 * 108.96962 * 161.98276 * 11 10 8 32 32 H 1.08995 * 108.97320 * 280.69268 * 11 10 8 33 33 H 0.97000 * 119.99932 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.11954 * 279.45499 * 21 12 11 35 35 H 1.08994 * 109.11587 * 160.37374 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0068 7 1 4.0693 3.3807 -0.9914 8 6 4.9329 3.2933 1.0953 9 1 5.7381 3.9751 0.8213 10 6 5.3453 2.1539 2.0146 11 6 4.4371 2.0267 3.2232 12 7 3.0383 2.2095 2.8745 13 6 2.1445 1.2218 3.1916 14 1 2.4624 0.1897 3.2048 15 6 0.8297 1.5470 3.4961 16 7 0.4857 2.8061 3.6656 17 14 -0.4510 0.1978 3.6653 18 1 -0.4257 -0.3379 5.0501 19 1 -1.7969 0.7537 3.3742 20 1 -0.1487 -0.8949 2.7062 21 6 2.5533 3.4046 2.2006 22 6 3.5262 3.8670 1.1309 23 1 3.4380 4.9224 0.8734 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.3181 1.2201 1.4530 30 1 6.3648 2.3290 2.3580 31 1 4.5667 1.0370 3.6612 32 1 4.7200 2.7786 3.9598 33 1 -0.4331 3.0334 3.8780 34 1 2.4244 4.2006 2.9340 35 1 1.5906 3.1876 1.7379 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932062906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:32 Heat of formation + Delta-G solvation = -38.188978 kcal Electronic energy + Delta-G solvation = -18850.459508 eV Core-core repulsion = 16043.175068 eV Total energy + Delta-G solvation = -2807.284440 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13052 -37.95668 -35.74567 -34.29559 -31.68321 -31.04095 -29.78935 -26.39543 -24.66879 -23.20219 -21.96088 -21.79805 -19.46203 -17.92507 -16.83286 -16.59296 -15.94794 -15.42148 -14.83627 -14.53864 -13.84492 -13.56309 -13.07922 -12.89939 -12.57071 -12.24290 -12.11039 -11.92005 -11.45300 -11.06888 -11.00485 -10.89573 -10.67660 -10.49389 -10.27323 -10.02286 -9.78796 -9.68254 -9.57517 -9.24601 -8.95019 -8.38704 -6.57427 -5.74701 -3.22700 3.02693 3.33466 3.41138 3.41857 3.43590 4.22157 4.49883 5.14398 5.29626 5.35607 5.45176 5.49706 5.56171 5.60406 5.69009 5.85618 5.86178 6.10239 6.15080 6.26262 6.42365 6.50684 6.56360 6.60089 6.65513 6.71697 6.90873 7.10417 7.36018 7.44937 7.74078 7.84717 8.54213 8.62892 9.30790 9.94011 10.41489 11.33475 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.013352 C = 0.010401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.777745 B = 2096.613864 C = 2691.306653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 O -0.331 6.331 4 C 0.521 3.479 5 O -0.524 6.524 6 C -0.176 4.176 7 H 0.126 0.874 8 C -0.107 4.107 9 H 0.099 0.901 10 C -0.131 4.131 11 C 0.155 3.845 12 N -0.588 5.588 13 C -0.250 4.250 14 H 0.058 0.942 15 C 0.015 3.985 16 N -0.903 5.903 17 Si 0.887 3.113 18 H -0.290 1.290 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.205 3.795 22 C -0.132 4.132 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.012 0.988 33 H 0.253 0.747 34 H 0.036 0.964 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 0.091 -7.107 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.000 4.000 3 O -0.246 6.246 4 C 0.365 3.635 5 O -0.414 6.414 6 C -0.194 4.194 7 H 0.144 0.856 8 C -0.126 4.126 9 H 0.117 0.883 10 C -0.170 4.170 11 C 0.028 3.972 12 N -0.311 5.311 13 C -0.380 4.380 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.547 5.547 17 Si 0.717 3.283 18 H -0.217 1.217 19 H -0.214 1.214 20 H -0.199 1.199 21 C 0.079 3.921 22 C -0.152 4.152 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.481 -0.140 -7.065 7.877 hybrid contribution -0.650 -0.708 0.029 0.962 sum 2.831 -0.848 -7.036 7.632 Atomic orbital electron populations 1.21810 0.93741 1.01912 1.03269 1.22768 0.94675 0.81037 1.01506 1.86504 1.23969 1.31249 1.82870 1.22090 0.80590 0.90308 0.70523 1.90490 1.60773 1.43082 1.47018 1.21851 1.07833 0.92882 0.96879 0.85599 1.22026 0.92955 1.00275 0.97345 0.88252 1.21464 0.98977 0.98052 0.98544 1.20136 0.85393 0.98834 0.92848 1.43196 1.02292 1.19527 1.66068 1.19043 0.90682 0.87274 1.41021 0.92472 1.25045 0.98499 0.95679 0.99116 1.69973 1.17516 1.15581 1.51675 0.86627 0.81552 0.82018 0.78069 1.21703 1.21433 1.19892 1.19794 0.93822 0.88748 0.89724 1.22888 0.97479 0.97122 0.97671 0.88320 0.90985 0.92280 0.91265 0.92971 0.90737 0.89765 0.92583 0.92867 0.97005 0.93666 0.94571 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.12 37.16 0.38 -2.21 16 2 C 0.07 1.43 6.19 37.16 0.23 1.66 16 3 O -0.33 -7.07 9.18 -39.26 -0.36 -7.43 16 4 C 0.52 10.98 5.53 36.00 0.20 11.18 16 5 O -0.52 -11.85 14.44 -18.75 -0.27 -12.12 16 6 C -0.18 -3.20 6.27 -91.79 -0.58 -3.77 16 7 H 0.13 1.89 8.14 -51.93 -0.42 1.46 16 8 C -0.11 -1.90 6.17 -91.18 -0.56 -2.46 16 9 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 10 C -0.13 -2.52 5.52 -27.84 -0.15 -2.67 16 11 C 0.15 3.42 6.37 -5.33 -0.03 3.39 16 12 N -0.59 -14.64 2.09 -176.46 -0.37 -15.00 16 13 C -0.25 -6.71 9.18 -15.06 -0.14 -6.85 16 14 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 15 C 0.02 0.42 5.00 -17.43 -0.09 0.33 16 16 N -0.90 -25.48 11.01 55.49 0.61 -24.87 16 17 Si 0.89 21.12 27.32 -169.99 -4.64 16.47 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.14 6.90 56.52 0.39 -5.75 16 21 C 0.20 4.84 4.06 -5.17 -0.02 4.82 16 22 C -0.13 -2.50 5.98 -92.20 -0.55 -3.05 16 23 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 24 H 0.07 1.44 5.61 -51.93 -0.29 1.14 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 28 H 0.07 1.59 8.11 -51.93 -0.42 1.17 16 29 H 0.08 1.78 5.35 -51.93 -0.28 1.51 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.18 7.79 -51.93 -0.40 0.78 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.04 0.93 7.90 -51.93 -0.41 0.52 16 35 H 0.09 2.30 6.10 -51.93 -0.32 1.98 16 LS Contribution 277.64 15.07 4.18 4.18 Total: -1.00 -29.59 277.64 -7.23 -36.82 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.06 Total: 1.60 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.35 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.24 Total: -39.88 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.63 Total: -19.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.64 Total: 16.47 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.59 -7.23 -36.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932062906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.373 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds