Wall clock time and date at job start Sun Mar 29 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47089 * 2 1 4 4 C 1.34230 * 117.00196 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00074 * 179.72661 * 4 3 2 7 7 H 1.08997 * 115.57620 * 271.97937 * 6 4 3 8 8 C 1.53819 * 117.54064 * 125.99416 * 6 4 3 9 9 H 1.09001 * 116.79264 * 145.58251 * 8 6 4 10 10 C 1.52098 * 115.98382 * 5.24262 * 8 6 4 11 11 C 1.51718 * 112.45934 * 270.68722 * 10 8 6 12 12 N 1.45314 * 111.99373 * 41.34220 * 11 10 8 13 13 C 1.36936 * 118.81627 * 124.07540 * 12 11 10 14 14 H 1.08003 * 120.00266 * 328.58274 * 13 12 11 15 15 C 1.38818 * 119.99899 * 148.57855 * 13 12 11 16 16 N 1.31618 * 119.99759 * 350.41006 * 15 13 12 17 17 Si 1.86801 * 119.99882 * 170.41237 * 15 13 12 18 18 H 1.48505 * 109.47092 * 85.58938 * 17 15 13 19 19 H 1.48502 * 109.46698 * 205.58238 * 17 15 13 20 20 H 1.48497 * 109.47223 * 325.58522 * 17 15 13 21 21 C 1.45519 * 122.36407 * 304.06953 * 12 11 10 22 22 C 1.51810 * 111.27533 * 39.91468 * 21 12 11 23 23 H 1.08999 * 114.17650 * 202.92042 * 22 21 12 24 24 H 1.08998 * 109.47411 * 300.00044 * 1 2 3 25 25 H 1.09001 * 109.47301 * 60.00214 * 1 2 3 26 26 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46948 * 239.99881 * 2 1 3 28 28 H 1.08996 * 109.47007 * 120.00171 * 2 1 3 29 29 H 1.09005 * 108.88347 * 31.45414 * 10 8 6 30 30 H 1.08991 * 108.88465 * 150.01669 * 10 8 6 31 31 H 1.09000 * 108.96962 * 161.98276 * 11 10 8 32 32 H 1.08995 * 108.97320 * 280.69268 * 11 10 8 33 33 H 0.97000 * 119.99932 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.11954 * 279.45499 * 21 12 11 35 35 H 1.08994 * 109.11587 * 160.37374 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0068 7 1 4.0693 3.3807 -0.9914 8 6 4.9329 3.2933 1.0953 9 1 5.7381 3.9751 0.8213 10 6 5.3453 2.1539 2.0146 11 6 4.4371 2.0267 3.2232 12 7 3.0383 2.2095 2.8745 13 6 2.1445 1.2218 3.1916 14 1 2.4624 0.1897 3.2048 15 6 0.8297 1.5470 3.4961 16 7 0.4857 2.8061 3.6656 17 14 -0.4510 0.1978 3.6653 18 1 -0.4257 -0.3379 5.0501 19 1 -1.7969 0.7537 3.3742 20 1 -0.1487 -0.8949 2.7062 21 6 2.5533 3.4046 2.2006 22 6 3.5262 3.8670 1.1309 23 1 3.4380 4.9224 0.8734 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.3181 1.2201 1.4530 30 1 6.3648 2.3290 2.3580 31 1 4.5667 1.0370 3.6612 32 1 4.7200 2.7786 3.9598 33 1 -0.4331 3.0334 3.8780 34 1 2.4244 4.2006 2.9340 35 1 1.5906 3.1876 1.7379 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932062906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:32 Heat of formation + Delta-G solvation = -54.918387 kcal Electronic energy + Delta-G solvation = -18851.184950 eV Core-core repulsion = 16043.175068 eV Total energy + Delta-G solvation = -2808.009882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.72425 -39.57657 -37.41841 -36.10769 -33.54105 -32.53806 -31.59589 -28.23077 -26.36882 -24.89064 -23.71049 -23.34878 -21.02003 -19.72626 -18.44285 -18.31543 -17.62137 -17.08612 -16.59257 -16.21644 -15.59780 -15.37711 -14.78089 -14.47893 -14.29899 -13.84407 -13.58427 -13.54823 -13.16759 -12.82247 -12.77753 -12.54414 -12.32987 -12.27943 -12.12841 -11.90975 -11.47862 -11.30702 -11.14162 -10.82808 -10.63728 -10.34458 -8.58529 -7.82229 -5.33120 1.40417 1.42684 1.43706 1.51029 1.94138 2.50311 2.77544 3.35371 3.70302 3.71045 3.87117 3.96457 4.03889 4.14954 4.24493 4.39550 4.43731 4.53248 4.66326 4.82003 4.94599 4.97547 5.01727 5.08236 5.13975 5.14738 5.23355 5.39047 5.57641 5.67754 5.78912 5.84141 6.46240 7.01595 7.25073 7.97700 8.37212 9.23067 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.013352 C = 0.010401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.777745 B = 2096.613864 C = 2691.306653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 O -0.345 6.345 4 C 0.510 3.490 5 O -0.546 6.546 6 C -0.172 4.172 7 H 0.168 0.832 8 C -0.098 4.098 9 H 0.147 0.853 10 C -0.127 4.127 11 C 0.150 3.850 12 N -0.602 5.602 13 C -0.251 4.251 14 H 0.043 0.957 15 C -0.024 4.024 16 N -0.929 5.929 17 Si 0.934 3.066 18 H -0.296 1.296 19 H -0.287 1.287 20 H -0.255 1.255 21 C 0.216 3.784 22 C -0.142 4.142 23 H 0.133 0.867 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.013 0.987 33 H 0.249 0.751 34 H 0.006 0.994 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.484 0.516 -8.715 9.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.003 4.003 3 O -0.261 6.261 4 C 0.356 3.644 5 O -0.437 6.437 6 C -0.191 4.191 7 H 0.186 0.814 8 C -0.116 4.116 9 H 0.164 0.836 10 C -0.165 4.165 11 C 0.024 3.976 12 N -0.325 5.325 13 C -0.382 4.382 14 H 0.060 0.940 15 C -0.221 4.221 16 N -0.574 5.574 17 Si 0.763 3.237 18 H -0.223 1.223 19 H -0.213 1.213 20 H -0.180 1.180 21 C 0.091 3.909 22 C -0.161 4.161 23 H 0.151 0.849 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.513 0.278 -8.683 9.790 hybrid contribution -0.940 -0.889 0.576 1.417 sum 3.572 -0.611 -8.108 8.881 Atomic orbital electron populations 1.21827 0.92119 1.03509 1.02795 1.22889 0.96026 0.80359 1.01055 1.86518 1.24507 1.32290 1.82773 1.22792 0.80343 0.91502 0.69761 1.90476 1.61056 1.44125 1.48080 1.22133 1.07322 0.90847 0.98761 0.81450 1.22249 0.93310 0.99839 0.96199 0.83584 1.21360 0.99915 0.98128 0.97135 1.20250 0.84725 0.98077 0.94597 1.43397 1.03126 1.19364 1.66636 1.19062 0.91380 0.87204 1.40536 0.93959 1.25574 0.99907 0.97322 0.99259 1.70121 1.17418 1.17069 1.52800 0.85870 0.79466 0.80546 0.77845 1.22330 1.21337 1.17957 1.19424 0.94106 0.87248 0.90103 1.22684 0.97482 0.98977 0.96986 0.84905 0.94006 0.90067 0.88648 0.90800 0.93714 0.91763 0.89221 0.94229 0.96883 0.94175 0.97659 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 10.12 71.98 0.73 -4.11 16 2 C 0.07 2.69 6.19 71.98 0.45 3.14 16 3 O -0.35 -14.64 9.18 -51.41 -0.47 -15.12 16 4 C 0.51 20.91 5.53 71.24 0.39 21.31 16 5 O -0.55 -24.31 14.44 21.97 0.32 -23.99 16 6 C -0.17 -5.72 6.27 -11.55 -0.07 -5.79 16 7 H 0.17 4.16 8.14 -2.39 -0.02 4.14 16 8 C -0.10 -3.07 6.17 -11.16 -0.07 -3.14 16 9 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 10 C -0.13 -4.56 5.52 29.88 0.16 -4.40 16 11 C 0.15 6.58 6.37 86.18 0.55 7.13 16 12 N -0.60 -30.39 2.09 -712.19 -1.49 -31.87 16 13 C -0.25 -13.85 9.18 84.03 0.77 -13.08 16 14 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 15 C -0.02 -1.35 5.00 84.86 0.42 -0.92 16 16 N -0.93 -53.93 11.01 21.65 0.24 -53.69 16 17 Si 0.93 44.13 27.32 68.60 1.87 46.00 16 18 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 20 H -0.26 -11.14 6.90 99.48 0.69 -10.46 16 21 C 0.22 10.33 4.06 86.17 0.35 10.68 16 22 C -0.14 -5.03 5.98 -11.82 -0.07 -5.10 16 23 H 0.13 3.82 8.14 -2.39 -0.02 3.80 16 24 H 0.04 1.64 5.61 -2.39 -0.01 1.63 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 28 H 0.04 1.95 8.11 -2.39 -0.02 1.93 16 29 H 0.06 2.63 5.35 -2.38 -0.01 2.61 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.04 1.79 7.79 -2.39 -0.02 1.78 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.01 0.29 7.90 -2.39 -0.02 0.27 16 35 H 0.05 2.93 6.10 -2.39 -0.01 2.92 16 Total: -1.00 -66.13 277.64 5.14 -60.99 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.05 Total: 11.96 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 3.62 Total: 5.72 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.25 Total: -85.57 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.15 Total: -39.11 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.87 Total: 46.00 kcal Total: -66.13 5.14 -60.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932062906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.076 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds