Wall clock time and date at job start Sun Mar 29 2020 22:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00402 * 2 1 4 4 O 1.20821 * 119.99718 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00139 * 179.72974 * 3 2 1 6 6 C 1.52360 * 115.89387 * 223.11876 * 5 3 2 7 7 C 1.51275 * 60.17133 * 253.85154 * 6 5 3 8 8 H 1.08997 * 116.46054 * 107.89484 * 7 6 5 9 9 C 1.52782 * 117.54554 * 249.54649 * 7 6 5 10 10 C 1.53065 * 109.84016 * 88.20753 * 9 7 6 11 11 C 1.53310 * 108.35401 * 308.34917 * 10 9 7 12 12 N 1.45866 * 114.63023 * 9.41092 * 5 3 2 13 13 C 1.46898 * 111.00148 * 291.62757 * 12 5 3 14 14 C 1.50702 * 109.47090 * 183.67278 * 13 12 5 15 15 H 1.07994 * 120.00367 * 354.71756 * 14 13 12 16 16 C 1.37882 * 119.99605 * 174.71997 * 14 13 12 17 17 N 1.31509 * 120.00345 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99517 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47279 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46902 * 119.99823 * 18 16 14 21 21 H 1.48498 * 109.47085 * 239.99757 * 18 16 14 22 22 H 1.08994 * 109.46837 * 59.99867 * 1 2 3 23 23 H 1.08995 * 109.46920 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46595 * 300.00082 * 1 2 3 25 25 H 1.09002 * 117.52431 * 0.90659 * 6 5 3 26 26 H 1.08994 * 117.53617 * 146.11230 * 6 5 3 27 27 H 1.09002 * 108.42938 * 328.62903 * 9 7 6 28 28 H 1.09002 * 110.16763 * 208.86338 * 9 7 6 29 29 H 1.09004 * 109.68306 * 188.63863 * 10 9 7 30 30 H 1.08999 * 109.72013 * 68.08708 * 10 9 7 31 31 H 1.09005 * 109.57659 * 313.88613 * 11 10 9 32 32 H 1.08990 * 109.69010 * 193.54628 * 11 10 9 33 33 H 1.08998 * 109.47219 * 303.67394 * 13 12 5 34 34 H 1.08996 * 109.47696 * 63.67007 * 13 12 5 35 35 H 0.96998 * 120.00187 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 0.0062 6 6 4.1746 2.3107 0.9434 7 6 4.1675 2.5583 -0.5490 8 1 3.4766 3.3193 -0.9117 9 6 5.5093 2.5174 -1.2784 10 6 5.8168 1.0847 -1.7206 11 6 5.6690 0.1621 -0.5051 12 7 4.2427 -0.0002 -0.2051 13 6 4.0447 -0.8975 0.9410 14 6 4.8297 -2.1660 0.7274 15 1 5.3478 -2.3298 -0.2059 16 6 4.8864 -3.1177 1.7236 17 7 4.2558 -2.9181 2.8603 18 14 5.8589 -4.6904 1.4585 19 1 6.4714 -4.6716 0.1059 20 1 6.9281 -4.7900 2.4842 21 1 4.9508 -5.8595 1.5750 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.4905 2.9056 1.5486 26 1 5.1285 2.0681 1.4116 27 1 6.2846 2.8603 -0.5931 28 1 5.4823 3.1692 -2.1516 29 1 6.8364 1.0290 -2.1020 30 1 5.1165 0.7817 -2.4990 31 1 6.1747 0.6047 0.3531 32 1 6.1086 -0.8103 -0.7266 33 1 4.3889 -0.4061 1.8510 34 1 2.9857 -1.1373 1.0361 35 1 4.2954 -3.5877 3.5609 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933162255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:27 Heat of formation + Delta-G solvation = -74.043979 kcal Electronic energy + Delta-G solvation = -18027.698393 eV Core-core repulsion = 15218.859163 eV Total energy + Delta-G solvation = -2808.839230 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.14147 -40.25263 -37.63888 -35.81858 -34.12124 -33.62709 -29.15127 -28.73709 -26.86247 -25.37082 -24.13968 -22.59473 -21.73817 -19.65639 -18.85496 -18.25926 -18.02977 -17.28495 -16.64801 -15.94703 -15.75443 -15.29523 -14.84279 -14.56045 -14.32886 -14.15886 -14.07388 -13.78902 -13.20113 -12.88628 -12.78677 -12.59930 -12.31004 -12.08873 -11.97195 -11.79866 -11.76927 -11.62109 -11.36175 -11.06855 -10.77571 -10.57032 -8.95600 -8.18084 -6.26990 0.96476 1.42485 1.43576 1.56490 1.75328 2.40969 2.69110 3.09577 3.16347 3.47548 3.67520 3.76963 4.08402 4.18944 4.26019 4.27747 4.30774 4.51593 4.63479 4.67268 4.73675 4.88064 4.93742 5.08695 5.13568 5.26389 5.28943 5.32955 5.44520 5.54294 5.65607 6.04274 6.29902 6.50472 6.81431 6.89888 7.41857 8.94115 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.021942 B = 0.009216 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.779555 B = 3037.377505 C = 3896.072031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.508 3.492 4 O -0.536 6.536 5 C 0.020 3.980 6 C -0.180 4.180 7 C -0.086 4.086 8 H 0.123 0.877 9 C -0.087 4.087 10 C -0.114 4.114 11 C 0.062 3.938 12 N -0.500 5.500 13 C 0.208 3.792 14 C -0.524 4.524 15 H 0.070 0.930 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.260 1.260 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.072 0.928 23 H 0.119 0.881 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.076 0.924 33 H -0.039 1.039 34 H 0.020 0.980 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 8.932 -7.756 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.353 3.647 4 O -0.427 6.427 5 C -0.074 4.074 6 C -0.220 4.220 7 C -0.104 4.104 8 H 0.141 0.859 9 C -0.125 4.125 10 C -0.152 4.152 11 C -0.065 4.065 12 N -0.223 5.223 13 C 0.083 3.917 14 C -0.562 4.562 15 H 0.088 0.912 16 C -0.194 4.194 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.091 0.909 23 H 0.138 0.862 24 H 0.079 0.921 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.095 0.905 33 H -0.021 1.021 34 H 0.038 0.962 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.096 8.886 -8.004 11.959 hybrid contribution 0.094 -0.672 1.335 1.497 sum -0.002 8.214 -6.669 10.580 Atomic orbital electron populations 1.23537 0.75394 1.05221 1.02568 1.86762 1.24541 1.32466 1.82689 1.22652 0.90270 0.81164 0.70617 1.90558 1.66790 1.36765 1.48582 1.20814 0.87463 0.89536 1.09547 1.23326 1.03227 1.00847 0.94569 1.22321 1.00147 0.92986 0.94988 0.85868 1.21284 0.92831 0.97570 1.00781 1.21718 1.02953 0.93784 0.96710 1.22137 0.86823 1.00552 0.97031 1.61174 1.13594 1.07180 1.40367 1.19466 0.96555 0.90478 0.85228 1.21554 1.30941 1.02693 1.01010 0.91206 1.25878 0.96847 1.02025 0.94693 1.70110 1.44464 1.36446 1.06355 0.85362 0.78165 0.78678 0.78583 1.18364 1.20603 1.20710 0.90938 0.86246 0.92051 0.87980 0.87776 0.90095 0.87969 0.88615 0.91514 0.96048 0.90522 1.02103 0.96181 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.98 16 2 O -0.35 -14.56 8.20 -51.42 -0.42 -14.98 16 3 C 0.51 20.73 7.47 71.23 0.53 21.26 16 4 O -0.54 -21.53 15.92 21.98 0.35 -21.18 16 5 C 0.02 0.77 2.15 2.50 0.01 0.77 16 6 C -0.18 -6.07 9.06 29.82 0.27 -5.80 16 7 C -0.09 -2.53 5.54 -11.69 -0.06 -2.60 16 8 H 0.12 3.41 7.73 -2.39 -0.02 3.39 16 9 C -0.09 -2.03 5.94 30.54 0.18 -1.85 16 10 C -0.11 -3.09 6.07 30.72 0.19 -2.91 16 11 C 0.06 2.32 4.83 86.45 0.42 2.74 16 12 N -0.50 -21.97 4.52 -860.64 -3.89 -25.86 16 13 C 0.21 11.21 4.62 85.56 0.40 11.60 16 14 C -0.52 -29.27 8.34 25.60 0.21 -29.06 16 15 H 0.07 3.77 6.22 -2.91 -0.02 3.75 16 16 C 0.00 0.20 5.46 84.66 0.46 0.67 16 17 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 18 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 23 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 24 H 0.06 1.79 8.13 -2.38 -0.02 1.77 16 25 H 0.10 3.33 8.11 -2.39 -0.02 3.31 16 26 H 0.10 3.54 7.17 -2.39 -0.02 3.52 16 27 H 0.08 1.71 8.07 -2.39 -0.02 1.69 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.02 0.82 6.97 -2.38 -0.02 0.80 16 32 H 0.08 3.13 6.00 -2.39 -0.01 3.12 16 33 H -0.04 -2.29 8.06 -2.39 -0.02 -2.31 16 34 H 0.02 1.19 6.12 -2.39 -0.01 1.17 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -67.49 284.41 3.22 -64.27 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.08 Total: 11.02 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 3.80 Total: -3.19 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -3.61 Total: -81.73 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.07 Total: -36.16 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -67.49 3.22 -64.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933162255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.772 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds