Wall clock time and date at job start Sun Mar 29 2020 21:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.62247 * 2 1 4 4 C 1.53229 * 109.62727 * 239.62221 * 2 1 3 5 5 C 1.52965 * 109.41314 * 294.90279 * 4 2 1 6 6 H 1.09000 * 109.40611 * 56.51554 * 5 4 2 7 7 C 1.50695 * 109.41398 * 176.30089 * 5 4 2 8 8 O 1.21287 * 120.00060 * 0.02562 * 7 5 4 9 9 N 1.34777 * 120.00034 * 179.97438 * 7 5 4 10 10 C 1.46502 * 120.00144 * 180.02562 * 9 7 5 11 11 C 1.50696 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99666 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99884 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00098 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46817 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46988 * 120.00105 * 15 13 11 18 18 H 1.48499 * 109.47154 * 240.00348 * 15 13 11 19 19 C 1.52951 * 109.81766 * 296.42326 * 5 4 2 20 20 C 1.53235 * 109.41904 * 63.57924 * 19 5 4 21 21 C 1.51265 * 109.62901 * 120.57324 * 2 1 3 22 22 O 1.20756 * 120.85097 * 248.39219 * 21 2 1 23 23 H 1.08999 * 109.47394 * 180.37956 * 1 2 3 24 24 H 1.09000 * 109.46967 * 300.38201 * 1 2 3 25 25 H 1.09000 * 109.47348 * 60.38095 * 1 2 3 26 26 H 1.09002 * 109.48399 * 54.89049 * 4 2 1 27 27 H 1.08999 * 109.48488 * 174.92068 * 4 2 1 28 28 H 0.96994 * 119.99641 * 0.02562 * 9 7 5 29 29 H 1.09004 * 109.47043 * 300.00644 * 10 9 7 30 30 H 1.09002 * 109.47193 * 59.99743 * 10 9 7 31 31 H 0.97004 * 119.99912 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47552 * 303.59515 * 19 5 4 33 33 H 1.09003 * 109.48446 * 183.56153 * 19 5 4 34 34 H 1.08995 * 109.62638 * 185.66368 * 20 19 5 35 35 H 1.08993 * 109.62836 * 65.08794 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 6 2.0446 -0.7299 -1.2451 5 6 1.6432 -2.2041 -1.1726 6 1 0.5612 -2.2800 -1.0652 7 6 2.0697 -2.9022 -2.4381 8 8 2.6388 -2.2814 -3.3109 9 7 1.8197 -4.2167 -2.5997 10 6 2.2349 -4.8956 -3.8297 11 6 1.8410 -6.3485 -3.7592 12 1 1.3320 -6.7281 -2.8856 13 6 2.1296 -7.1928 -4.8102 14 7 2.7490 -6.7303 -5.8742 15 14 1.6408 -8.9936 -4.7231 16 1 0.9607 -9.2598 -3.4300 17 1 0.7172 -9.3105 -5.8420 18 1 2.8551 -9.8418 -4.8281 19 6 2.3208 -2.8676 0.0275 20 6 1.8165 -2.2181 1.3206 21 6 2.0381 -0.7247 1.2267 22 8 2.6057 -0.1263 2.1087 23 1 -0.3634 -1.0276 0.0068 24 1 -0.3633 0.5198 0.8865 25 1 -0.3634 0.5079 -0.8934 26 1 1.6101 -0.2782 -2.1369 27 1 3.1308 -0.6507 -1.2900 28 1 1.3650 -4.7132 -1.9015 29 1 1.7475 -4.4277 -4.6852 30 1 3.3164 -4.8177 -3.9405 31 1 2.9524 -7.3245 -6.6135 32 1 3.4004 -2.7380 -0.0473 33 1 2.0819 -3.9311 0.0378 34 1 2.3694 -2.6176 2.1707 35 1 0.7531 -2.4234 1.4428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116847695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:12 Heat of formation + Delta-G solvation = -105.480766 kcal Electronic energy + Delta-G solvation = -17090.899376 eV Core-core repulsion = 14280.696945 eV Total energy + Delta-G solvation = -2810.202431 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49075 -38.85366 -36.34580 -34.26425 -32.85151 -32.16246 -29.91591 -27.40609 -26.07994 -23.30278 -22.88015 -21.82320 -19.66579 -18.51367 -17.47996 -16.16120 -15.78748 -15.50996 -15.15067 -14.86488 -14.63160 -14.16800 -13.95730 -13.69780 -12.92214 -12.89641 -12.69630 -12.28864 -12.02188 -11.95253 -11.70148 -11.56890 -11.14143 -11.08208 -10.94496 -10.88953 -10.53702 -10.33738 -9.43782 -9.40712 -9.02417 -8.77290 -7.92383 -6.19859 -4.26963 1.81315 3.21124 3.28372 3.29002 3.31111 3.87243 4.03656 4.33030 4.44979 4.61944 4.78653 4.89449 4.93279 5.11762 5.16565 5.27554 5.28772 5.38911 5.51175 5.61896 5.69064 5.80368 5.82826 5.92100 5.99572 6.21579 6.25549 7.27249 7.33969 7.39221 7.48137 7.62788 7.93751 8.58300 8.74340 9.05536 9.40021 10.90368 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044501 B = 0.004829 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.044498 B = 5797.498246 C = 6077.489597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 H 0.095 0.905 4 C -0.090 4.090 5 C -0.115 4.115 6 H 0.100 0.900 7 C 0.502 3.498 8 O -0.555 6.555 9 N -0.711 5.711 10 C 0.248 3.752 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.106 4.106 20 C -0.167 4.167 21 C 0.368 3.632 22 O -0.462 6.462 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.390 0.610 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 8.574 12.701 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 H 0.114 0.886 4 C -0.127 4.127 5 C -0.137 4.137 6 H 0.118 0.882 7 C 0.286 3.714 8 O -0.434 6.434 9 N -0.359 5.359 10 C 0.128 3.872 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.144 4.144 20 C -0.205 4.205 21 C 0.244 3.756 22 O -0.335 6.335 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.223 0.777 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.627 9.247 12.327 16.090 hybrid contribution -0.480 -1.347 0.151 1.438 sum -5.108 7.900 12.478 15.627 Atomic orbital electron populations 1.21797 0.92611 1.02931 1.02741 1.21980 0.98048 1.00960 0.94949 0.88635 1.21383 1.02174 0.92880 0.96311 1.21446 1.02226 0.95974 0.94036 0.88232 1.20326 0.80069 0.82987 0.87981 1.90665 1.42894 1.65715 1.44114 1.46478 1.58473 1.08584 1.22343 1.19119 0.95992 0.91159 0.80978 1.21253 1.39807 0.93443 1.03636 0.91857 1.24952 0.94761 0.99274 0.95012 1.69984 1.39868 1.35914 1.06496 0.86371 0.78316 0.84121 0.78153 1.19629 1.20793 1.20790 1.21517 1.01219 1.00376 0.91267 1.22311 1.04103 0.94013 1.00095 1.24958 0.73725 0.91378 0.85553 1.90390 1.32425 1.70915 1.39814 0.91527 0.92394 0.91059 0.89663 0.90755 0.77722 0.95537 0.95538 0.92480 0.90749 0.89739 0.89070 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.88 37.15 0.33 -0.82 16 2 C -0.14 -1.41 3.17 -91.38 -0.29 -1.70 16 3 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 4 C -0.09 -1.09 4.01 -26.63 -0.11 -1.20 16 5 C -0.12 -1.45 2.26 -91.82 -0.21 -1.66 16 6 H 0.10 1.03 6.42 -51.93 -0.33 0.70 16 7 C 0.50 9.31 7.16 -10.99 -0.08 9.24 16 8 O -0.55 -12.74 15.94 5.55 0.09 -12.66 16 9 N -0.71 -14.09 5.42 -61.47 -0.33 -14.43 16 10 C 0.25 6.40 5.43 -5.19 -0.03 6.37 16 11 C -0.54 -14.35 9.28 -34.44 -0.32 -14.67 16 12 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 15 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.11 -1.15 5.14 -26.64 -0.14 -1.29 16 20 C -0.17 -1.55 5.89 -27.48 -0.16 -1.71 16 21 C 0.37 4.19 6.06 -28.48 -0.17 4.01 16 22 O -0.46 -6.78 17.89 6.00 0.11 -6.67 16 23 H 0.07 0.48 5.97 -51.93 -0.31 0.17 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.09 8.00 -51.93 -0.42 0.67 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.39 6.51 7.67 -40.82 -0.31 6.19 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.85 7.43 -51.93 -0.39 0.47 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.71 7.79 -51.93 -0.40 0.31 16 LS Contribution 290.45 15.07 4.38 4.38 Total: -1.00 -32.47 290.45 -6.39 -38.87 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.08 Total: 1.86 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.27 Total: -1.79 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.40 Total: -39.42 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.20 Total: -19.33 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.47 -6.39 -38.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.614 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds