Wall clock time and date at job start Sun Mar 29 2020 21:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.62247 * 2 1 4 4 C 1.53229 * 109.62727 * 239.62221 * 2 1 3 5 5 C 1.52965 * 109.41314 * 294.90279 * 4 2 1 6 6 H 1.09000 * 109.40611 * 56.51554 * 5 4 2 7 7 C 1.50695 * 109.41398 * 176.30089 * 5 4 2 8 8 O 1.21287 * 120.00060 * 0.02562 * 7 5 4 9 9 N 1.34777 * 120.00034 * 179.97438 * 7 5 4 10 10 C 1.46502 * 120.00144 * 180.02562 * 9 7 5 11 11 C 1.50696 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99666 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99884 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00098 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99955 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46817 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46988 * 120.00105 * 15 13 11 18 18 H 1.48499 * 109.47154 * 240.00348 * 15 13 11 19 19 C 1.52951 * 109.81766 * 296.42326 * 5 4 2 20 20 C 1.53235 * 109.41904 * 63.57924 * 19 5 4 21 21 C 1.51265 * 109.62901 * 120.57324 * 2 1 3 22 22 O 1.20756 * 120.85097 * 248.39219 * 21 2 1 23 23 H 1.08999 * 109.47394 * 180.37956 * 1 2 3 24 24 H 1.09000 * 109.46967 * 300.38201 * 1 2 3 25 25 H 1.09000 * 109.47348 * 60.38095 * 1 2 3 26 26 H 1.09002 * 109.48399 * 54.89049 * 4 2 1 27 27 H 1.08999 * 109.48488 * 174.92068 * 4 2 1 28 28 H 0.96994 * 119.99641 * 0.02562 * 9 7 5 29 29 H 1.09004 * 109.47043 * 300.00644 * 10 9 7 30 30 H 1.09002 * 109.47193 * 59.99743 * 10 9 7 31 31 H 0.97004 * 119.99912 * 179.97438 * 14 13 11 32 32 H 1.08995 * 109.47552 * 303.59515 * 19 5 4 33 33 H 1.09003 * 109.48446 * 183.56153 * 19 5 4 34 34 H 1.08995 * 109.62638 * 185.66368 * 20 19 5 35 35 H 1.08993 * 109.62836 * 65.08794 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 6 2.0446 -0.7299 -1.2451 5 6 1.6432 -2.2041 -1.1726 6 1 0.5612 -2.2800 -1.0652 7 6 2.0697 -2.9022 -2.4381 8 8 2.6388 -2.2814 -3.3109 9 7 1.8197 -4.2167 -2.5997 10 6 2.2349 -4.8956 -3.8297 11 6 1.8410 -6.3485 -3.7592 12 1 1.3320 -6.7281 -2.8856 13 6 2.1296 -7.1928 -4.8102 14 7 2.7490 -6.7303 -5.8742 15 14 1.6408 -8.9936 -4.7231 16 1 0.9607 -9.2598 -3.4300 17 1 0.7172 -9.3105 -5.8420 18 1 2.8551 -9.8418 -4.8281 19 6 2.3208 -2.8676 0.0275 20 6 1.8165 -2.2181 1.3206 21 6 2.0381 -0.7247 1.2267 22 8 2.6057 -0.1263 2.1087 23 1 -0.3634 -1.0276 0.0068 24 1 -0.3633 0.5198 0.8865 25 1 -0.3634 0.5079 -0.8934 26 1 1.6101 -0.2782 -2.1369 27 1 3.1308 -0.6507 -1.2900 28 1 1.3650 -4.7132 -1.9015 29 1 1.7475 -4.4277 -4.6852 30 1 3.3164 -4.8177 -3.9405 31 1 2.9524 -7.3245 -6.6135 32 1 3.4004 -2.7380 -0.0473 33 1 2.0819 -3.9311 0.0378 34 1 2.3694 -2.6176 2.1707 35 1 0.7531 -2.4234 1.4428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116847695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:12 Heat of formation + Delta-G solvation = -128.232751 kcal Electronic energy + Delta-G solvation = -17091.885976 eV Core-core repulsion = 14280.696945 eV Total energy + Delta-G solvation = -2811.189031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56597 -40.24407 -37.47238 -36.13338 -34.41958 -33.41723 -31.00387 -29.18805 -27.05150 -24.97836 -23.78223 -23.21501 -21.20581 -19.42925 -19.05669 -17.73544 -17.15669 -16.84030 -16.40070 -16.25660 -15.81653 -15.61084 -15.20812 -14.75513 -14.36825 -14.06210 -13.93979 -13.64347 -13.44665 -13.08323 -12.86881 -12.76182 -12.74007 -12.50168 -12.19903 -12.05684 -11.90036 -11.47232 -11.39967 -10.79990 -10.62789 -10.32663 -9.79634 -8.27571 -6.43778 0.92233 1.45367 1.45917 1.59349 1.78057 2.33530 2.59293 3.08012 3.09526 3.53280 3.68622 3.80987 3.94076 4.13575 4.22817 4.35688 4.40258 4.51480 4.63954 4.86403 4.90690 4.96809 5.03297 5.08988 5.15276 5.18454 5.26526 5.27906 5.42680 5.51899 5.72138 5.87338 6.46467 6.68226 6.93933 7.25991 7.53118 8.84851 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.044501 B = 0.004829 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.044498 B = 5797.498246 C = 6077.489597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 H 0.093 0.907 4 C -0.087 4.087 5 C -0.100 4.100 6 H 0.137 0.863 7 C 0.498 3.502 8 O -0.604 6.604 9 N -0.704 5.704 10 C 0.264 3.736 11 C -0.552 4.552 12 H 0.087 0.913 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.983 3.017 16 H -0.250 1.250 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.103 4.103 20 C -0.158 4.158 21 C 0.369 3.631 22 O -0.500 6.500 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.410 0.590 29 H -0.013 1.013 30 H -0.015 1.015 31 H 0.268 0.732 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 7.323 14.916 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 H 0.111 0.889 4 C -0.125 4.125 5 C -0.120 4.120 6 H 0.155 0.845 7 C 0.286 3.714 8 O -0.487 6.487 9 N -0.353 5.353 10 C 0.141 3.859 11 C -0.590 4.590 12 H 0.105 0.895 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.807 3.193 16 H -0.174 1.174 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.141 4.141 20 C -0.195 4.195 21 C 0.247 3.753 22 O -0.376 6.376 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.246 0.754 29 H 0.005 0.995 30 H 0.003 0.997 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.787 8.000 14.592 17.972 hybrid contribution 0.226 -0.871 -0.579 1.070 sum -6.561 7.129 14.013 17.036 Atomic orbital electron populations 1.21839 0.90349 1.04221 1.03580 1.21923 0.99805 1.00337 0.93112 0.88904 1.21324 1.00899 0.93023 0.97278 1.21444 1.04388 0.95173 0.91031 0.84530 1.21426 0.78419 0.82236 0.89328 1.90646 1.44874 1.66645 1.46497 1.46187 1.58836 1.09273 1.21036 1.18545 0.93088 0.91902 0.82372 1.21658 1.39498 0.93431 1.04392 0.89544 1.26053 0.94460 1.04670 0.94447 1.70147 1.41417 1.37999 1.07597 0.85133 0.77884 0.77362 0.78965 1.17368 1.20626 1.20731 1.21506 1.00108 1.01305 0.91155 1.22305 1.06370 0.91803 0.99004 1.25379 0.72335 0.92513 0.85053 1.90391 1.34060 1.71876 1.41241 0.89977 0.91359 0.90544 0.90454 0.92975 0.75408 0.99488 0.99695 0.92351 0.92513 0.88147 0.88288 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.88 71.98 0.64 -1.17 16 2 C -0.13 -2.43 3.17 -11.29 -0.04 -2.46 16 3 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 4 C -0.09 -2.05 4.01 30.66 0.12 -1.93 16 5 C -0.10 -2.30 2.26 -11.57 -0.03 -2.32 16 6 H 0.14 2.23 6.42 -2.39 -0.02 2.22 16 7 C 0.50 18.48 7.16 87.66 0.63 19.11 16 8 O -0.60 -28.90 15.94 -3.05 -0.05 -28.94 16 9 N -0.70 -27.66 5.42 -466.78 -2.53 -30.18 16 10 C 0.26 14.05 5.43 85.63 0.46 14.52 16 11 C -0.55 -29.01 9.28 25.60 0.24 -28.77 16 12 H 0.09 4.05 7.60 -2.91 -0.02 4.02 16 13 C 0.00 0.17 5.46 84.65 0.46 0.63 16 14 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 15 Si 0.98 41.27 29.54 68.60 2.03 43.30 16 16 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 19 C -0.10 -1.96 5.14 30.66 0.16 -1.80 16 20 C -0.16 -2.33 5.89 30.11 0.18 -2.15 16 21 C 0.37 7.59 6.06 29.46 0.18 7.77 16 22 O -0.50 -14.06 17.89 -1.44 -0.03 -14.09 16 23 H 0.08 0.79 5.97 -2.39 -0.01 0.77 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 1.96 8.00 -2.39 -0.02 1.94 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.41 12.73 7.67 -92.71 -0.71 12.02 16 29 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 30 H -0.01 -0.91 8.14 -2.39 -0.02 -0.92 16 31 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.65 7.43 -2.39 -0.02 1.64 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.14 1.14 7.79 -2.39 -0.02 1.12 16 Total: -1.00 -74.08 290.45 3.09 -70.99 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.38 Total: 12.83 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 3.01 Total: 1.41 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.24 Total: -85.49 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.07 Total: -43.03 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -74.08 3.09 -70.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.247 kcal (2) G-P(sol) polarization free energy of solvation -74.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds